Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25445 and LU632_RS25450 are separated by 1 nucleotides LU632_RS25450 and LU632_RS25455 are separated by 278 nucleotides LU632_RS25455 and LU632_RS25460 are separated by 173 nucleotides
LU632_RS25445: LU632_RS25445 - relaxase/mobilization nuclease domain-containing protein, at 24,220 to 26,151
_RS25445
LU632_RS25450: LU632_RS25450 - mobilization protein, at 26,153 to 26,497
_RS25450
LU632_RS25455: LU632_RS25455 - molybdopterin-guanine dinucleotide biosynthesis protein MobC, at 26,776 to 27,087
_RS25455
LU632_RS25460: LU632_RS25460 - DUF945 domain-containing protein, at 27,261 to 28,094
_RS25460
Position (kb) 26
27
28 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 25.802 kb on + strand, within LU632_RS25445 at 26.087 kb on + strand at 26.115 kb on + strand at 26.195 kb on + strand, within LU632_RS25450 at 26.221 kb on + strand, within LU632_RS25450 at 26.221 kb on + strand, within LU632_RS25450 at 26.281 kb on - strand, within LU632_RS25450 at 26.395 kb on + strand, within LU632_RS25450 at 26.492 kb on - strand at 26.535 kb on + strand at 26.536 kb on - strand at 26.653 kb on + strand at 26.656 kb on - strand at 26.714 kb on - strand at 26.730 kb on - strand at 26.796 kb on + strand at 26.797 kb on - strand at 26.820 kb on + strand, within LU632_RS25455 at 26.868 kb on + strand, within LU632_RS25455 at 26.869 kb on - strand, within LU632_RS25455 at 27.085 kb on + strand at 27.312 kb on + strand at 27.421 kb on + strand, within LU632_RS25460 at 27.421 kb on + strand, within LU632_RS25460 at 27.442 kb on + strand, within LU632_RS25460 at 27.443 kb on - strand, within LU632_RS25460 at 27.447 kb on - strand, within LU632_RS25460 at 27.513 kb on - strand, within LU632_RS25460 at 27.513 kb on - strand, within LU632_RS25460 at 27.520 kb on + strand, within LU632_RS25460 at 27.521 kb on - strand, within LU632_RS25460 at 27.521 kb on - strand, within LU632_RS25460 at 27.521 kb on - strand, within LU632_RS25460 at 27.722 kb on + strand, within LU632_RS25460 at 27.764 kb on + strand, within LU632_RS25460 at 27.764 kb on + strand, within LU632_RS25460 at 27.768 kb on - strand, within LU632_RS25460 at 27.792 kb on - strand, within LU632_RS25460 at 27.854 kb on + strand, within LU632_RS25460 at 27.854 kb on + strand, within LU632_RS25460 at 27.941 kb on + strand, within LU632_RS25460 at 27.955 kb on + strand, within LU632_RS25460 at 27.955 kb on + strand, within LU632_RS25460 at 27.955 kb on + strand, within LU632_RS25460 at 27.956 kb on - strand, within LU632_RS25460 at 28.077 kb on - strand at 28.077 kb on - strand at 28.083 kb on + strand at 28.083 kb on + strand at 28.084 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 25,802 + LU632_RS25445 0.82 +2.7 26,087 + +0.2 26,115 + +1.4 26,195 + LU632_RS25450 0.12 -0.7 26,221 + LU632_RS25450 0.20 +3.3 26,221 + LU632_RS25450 0.20 -1.3 26,281 - LU632_RS25450 0.37 +0.7 26,395 + LU632_RS25450 0.70 -0.5 26,492 - +0.5 26,535 + +0.5 26,536 - -0.0 26,653 + +0.7 26,656 - +0.7 26,714 - -0.2 26,730 - -0.7 26,796 + +1.2 26,797 - +0.5 26,820 + LU632_RS25455 0.14 +0.1 26,868 + LU632_RS25455 0.29 +0.1 26,869 - LU632_RS25455 0.30 +1.0 27,085 + +0.1 27,312 + -1.0 27,421 + LU632_RS25460 0.19 +0.1 27,421 + LU632_RS25460 0.19 -2.2 27,442 + LU632_RS25460 0.22 +0.6 27,443 - LU632_RS25460 0.22 -0.1 27,447 - LU632_RS25460 0.22 +0.1 27,513 - LU632_RS25460 0.30 -0.5 27,513 - LU632_RS25460 0.30 -0.1 27,520 + LU632_RS25460 0.31 -0.4 27,521 - LU632_RS25460 0.31 +0.4 27,521 - LU632_RS25460 0.31 -0.6 27,521 - LU632_RS25460 0.31 -0.4 27,722 + LU632_RS25460 0.55 +0.6 27,764 + LU632_RS25460 0.60 +1.9 27,764 + LU632_RS25460 0.60 +0.0 27,768 - LU632_RS25460 0.61 -0.4 27,792 - LU632_RS25460 0.64 +1.5 27,854 + LU632_RS25460 0.71 +0.2 27,854 + LU632_RS25460 0.71 +0.7 27,941 + LU632_RS25460 0.82 -0.3 27,955 + LU632_RS25460 0.83 +0.4 27,955 + LU632_RS25460 0.83 +0.6 27,955 + LU632_RS25460 0.83 +0.4 27,956 - LU632_RS25460 0.83 -0.6 28,077 - -2.0 28,077 - -0.3 28,083 + +0.1 28,083 + -1.1 28,084 - -0.8
Or see this region's nucleotide sequence