Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mioC and LU632_RS24825 are separated by 328 nucleotides LU632_RS24825 and viaA are separated by 199 nucleotides
LU632_RS24820: mioC - FMN-binding protein MioC, at 4,729,272 to 4,729,715
mioC
LU632_RS24825: LU632_RS24825 - IS91 family transposase, at 4,730,044 to 4,731,267
_RS24825
LU632_RS24830: viaA - ATPase RavA stimulator ViaA, at 4,731,467 to 4,732,930
viaA
Position (kb) 4730
4731
4732 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4729.209 kb on + strand at 4729.215 kb on - strand at 4729.463 kb on - strand, within mioC at 4729.467 kb on + strand, within mioC at 4729.467 kb on + strand, within mioC at 4729.472 kb on + strand, within mioC at 4729.473 kb on - strand, within mioC at 4729.473 kb on - strand, within mioC at 4729.477 kb on - strand, within mioC at 4729.560 kb on + strand, within mioC at 4729.560 kb on + strand, within mioC at 4729.561 kb on - strand, within mioC at 4729.561 kb on - strand, within mioC at 4729.608 kb on + strand, within mioC at 4729.612 kb on - strand, within mioC at 4729.612 kb on - strand, within mioC at 4729.612 kb on - strand, within mioC at 4729.666 kb on + strand, within mioC at 4729.666 kb on + strand, within mioC at 4729.680 kb on + strand at 4729.680 kb on + strand at 4729.704 kb on + strand at 4729.705 kb on - strand at 4729.738 kb on + strand at 4729.742 kb on + strand at 4729.747 kb on + strand at 4729.747 kb on + strand at 4729.759 kb on - strand at 4729.770 kb on + strand at 4729.771 kb on - strand at 4729.780 kb on + strand at 4729.810 kb on - strand at 4729.810 kb on - strand at 4731.418 kb on + strand at 4731.418 kb on + strand at 4731.419 kb on - strand at 4731.422 kb on + strand at 4731.423 kb on - strand at 4731.430 kb on + strand at 4731.430 kb on + strand at 4731.431 kb on - strand at 4731.437 kb on + strand at 4731.523 kb on + strand at 4731.541 kb on + strand at 4731.541 kb on + strand at 4731.616 kb on + strand, within viaA at 4731.664 kb on + strand, within viaA at 4731.664 kb on + strand, within viaA at 4731.669 kb on - strand, within viaA at 4731.811 kb on - strand, within viaA at 4731.811 kb on - strand, within viaA at 4731.952 kb on + strand, within viaA at 4731.953 kb on - strand, within viaA at 4732.041 kb on + strand, within viaA at 4732.042 kb on - strand, within viaA
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 4,729,209 + -0.3 4,729,215 - -2.6 4,729,463 - mioC LU632_RS24820 0.43 -0.1 4,729,467 + mioC LU632_RS24820 0.44 -0.2 4,729,467 + mioC LU632_RS24820 0.44 +1.1 4,729,472 + mioC LU632_RS24820 0.45 +0.3 4,729,473 - mioC LU632_RS24820 0.45 -0.0 4,729,473 - mioC LU632_RS24820 0.45 +0.5 4,729,477 - mioC LU632_RS24820 0.46 +0.2 4,729,560 + mioC LU632_RS24820 0.65 -0.0 4,729,560 + mioC LU632_RS24820 0.65 -0.8 4,729,561 - mioC LU632_RS24820 0.65 -0.7 4,729,561 - mioC LU632_RS24820 0.65 -0.1 4,729,608 + mioC LU632_RS24820 0.76 -1.0 4,729,612 - mioC LU632_RS24820 0.77 -0.1 4,729,612 - mioC LU632_RS24820 0.77 -1.1 4,729,612 - mioC LU632_RS24820 0.77 -1.1 4,729,666 + mioC LU632_RS24820 0.89 +1.7 4,729,666 + mioC LU632_RS24820 0.89 +0.9 4,729,680 + +0.6 4,729,680 + -0.8 4,729,704 + +0.1 4,729,705 - +0.8 4,729,738 + -0.3 4,729,742 + -0.4 4,729,747 + +1.4 4,729,747 + +1.1 4,729,759 - -0.5 4,729,770 + -0.3 4,729,771 - +1.3 4,729,780 + -0.4 4,729,810 - -0.7 4,729,810 - +1.3 4,731,418 + -2.2 4,731,418 + -0.9 4,731,419 - +2.4 4,731,422 + -0.4 4,731,423 - -0.3 4,731,430 + +0.9 4,731,430 + +1.3 4,731,431 - -0.8 4,731,437 + -0.2 4,731,523 + -0.3 4,731,541 + -0.7 4,731,541 + -1.9 4,731,616 + viaA LU632_RS24830 0.10 -0.5 4,731,664 + viaA LU632_RS24830 0.13 -0.9 4,731,664 + viaA LU632_RS24830 0.13 -0.7 4,731,669 - viaA LU632_RS24830 0.14 -0.6 4,731,811 - viaA LU632_RS24830 0.23 -0.6 4,731,811 - viaA LU632_RS24830 0.23 -0.9 4,731,952 + viaA LU632_RS24830 0.33 +0.2 4,731,953 - viaA LU632_RS24830 0.33 +1.1 4,732,041 + viaA LU632_RS24830 0.39 -0.5 4,732,042 - viaA LU632_RS24830 0.39 +0.4
Or see this region's nucleotide sequence