Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24740

Experiment: plant=Squash; plant sample=QP3; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS24730 and LU632_RS24735 are separated by 177 nucleotidesLU632_RS24735 and LU632_RS24740 overlap by 14 nucleotidesLU632_RS24740 and LU632_RS24745 are separated by 195 nucleotides LU632_RS24730: LU632_RS24730 - IS91 family transposase, at 4,711,946 to 4,713,169 _RS24730 LU632_RS24735: LU632_RS24735 - hypothetical protein, at 4,713,347 to 4,713,697 _RS24735 LU632_RS24740: LU632_RS24740 - hypothetical protein, at 4,713,684 to 4,714,331 _RS24740 LU632_RS24745: LU632_RS24745 - IS91 family transposase, at 4,714,527 to 4,715,750 _RS24745 Position (kb) 4713 4714 4715Strain fitness (log2 ratio) -1 0 1at 4713.809 kb on + strand, within LU632_RS24740at 4713.809 kb on + strand, within LU632_RS24740at 4713.812 kb on - strand, within LU632_RS24740at 4714.249 kb on - strand, within LU632_RS24740

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA
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4,713,809 + LU632_RS24740 0.19 +0.4
4,713,809 + LU632_RS24740 0.19 +0.5
4,713,812 - LU632_RS24740 0.20 -0.3
4,714,249 - LU632_RS24740 0.87 +1.1

Or see this region's nucleotide sequence