Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24600

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
4,688,829	-				+1.0
4,688,851	-				-2.0
4,688,867	-				-0.5
4,689,003	+		LU632_RS24600	0.53	+0.5
4,689,004	-		LU632_RS24600	0.53	-0.3
4,689,008	-		LU632_RS24600	0.55	+0.3
4,689,042	+		LU632_RS24600	0.73	-0.3
4,689,042	+		LU632_RS24600	0.73	+3.4
4,689,043	-		LU632_RS24600	0.73	+1.1
4,689,252	+				+0.4
4,689,898	-				-0.1
4,689,908	+				-0.3
4,689,918	+				-1.0
4,689,919	-				-0.3
4,689,951	+				-1.7
4,689,951	+				-0.0
4,689,952	-				-0.1
4,689,952	-				+2.5
4,689,984	-				-1.7