Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt uvrD and yigB are separated by 57 nucleotides yigB and xerC overlap by 1 nucleotides xerC and LU632_RS24140 overlap by 4 nucleotides
LU632_RS24125: uvrD - DNA helicase II, at 4,600,882 to 4,603,044
uvrD
LU632_RS24130: yigB - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, at 4,603,102 to 4,603,818
yigB
LU632_RS24135: xerC - tyrosine recombinase XerC, at 4,603,818 to 4,604,726
xerC
LU632_RS24140: LU632_RS24140 - DUF484 domain-containing protein, at 4,604,723 to 4,605,427
_RS24140
Position (kb) 4603
4604 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4603.058 kb on - strand at 4603.058 kb on - strand at 4603.146 kb on + strand at 4603.146 kb on + strand at 4603.146 kb on - strand at 4603.225 kb on + strand, within yigB at 4603.313 kb on + strand, within yigB at 4603.314 kb on - strand, within yigB at 4603.314 kb on - strand, within yigB at 4603.314 kb on - strand, within yigB at 4603.314 kb on - strand, within yigB at 4603.314 kb on - strand, within yigB at 4603.317 kb on + strand, within yigB at 4603.318 kb on - strand, within yigB at 4603.362 kb on + strand, within yigB at 4603.373 kb on + strand, within yigB at 4603.373 kb on + strand, within yigB at 4603.373 kb on + strand, within yigB at 4603.374 kb on - strand, within yigB at 4603.523 kb on + strand, within yigB at 4603.524 kb on - strand, within yigB at 4603.535 kb on + strand, within yigB at 4603.565 kb on - strand, within yigB at 4603.565 kb on - strand, within yigB at 4603.584 kb on + strand, within yigB at 4603.584 kb on + strand, within yigB at 4603.585 kb on - strand, within yigB at 4603.585 kb on - strand, within yigB at 4603.614 kb on - strand, within yigB at 4603.632 kb on + strand, within yigB at 4603.633 kb on - strand, within yigB at 4603.633 kb on - strand, within yigB at 4603.659 kb on - strand, within yigB at 4603.694 kb on + strand, within yigB at 4603.754 kb on + strand at 4603.892 kb on + strand at 4604.009 kb on + strand, within xerC at 4604.291 kb on - strand, within xerC at 4604.632 kb on + strand, within xerC
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 4,603,058 - -1.8 4,603,058 - +0.4 4,603,146 + -1.1 4,603,146 + +0.1 4,603,146 - -0.7 4,603,225 + yigB LU632_RS24130 0.17 +1.4 4,603,313 + yigB LU632_RS24130 0.29 +0.1 4,603,314 - yigB LU632_RS24130 0.30 +3.6 4,603,314 - yigB LU632_RS24130 0.30 +0.3 4,603,314 - yigB LU632_RS24130 0.30 +1.5 4,603,314 - yigB LU632_RS24130 0.30 -0.9 4,603,314 - yigB LU632_RS24130 0.30 +0.7 4,603,317 + yigB LU632_RS24130 0.30 +0.6 4,603,318 - yigB LU632_RS24130 0.30 -0.2 4,603,362 + yigB LU632_RS24130 0.36 +0.2 4,603,373 + yigB LU632_RS24130 0.38 +1.7 4,603,373 + yigB LU632_RS24130 0.38 +1.5 4,603,373 + yigB LU632_RS24130 0.38 -0.3 4,603,374 - yigB LU632_RS24130 0.38 -0.9 4,603,523 + yigB LU632_RS24130 0.59 -0.9 4,603,524 - yigB LU632_RS24130 0.59 +0.9 4,603,535 + yigB LU632_RS24130 0.60 +2.2 4,603,565 - yigB LU632_RS24130 0.65 +0.5 4,603,565 - yigB LU632_RS24130 0.65 +1.0 4,603,584 + yigB LU632_RS24130 0.67 +0.9 4,603,584 + yigB LU632_RS24130 0.67 -0.6 4,603,585 - yigB LU632_RS24130 0.67 -0.8 4,603,585 - yigB LU632_RS24130 0.67 +0.1 4,603,614 - yigB LU632_RS24130 0.71 +1.1 4,603,632 + yigB LU632_RS24130 0.74 -0.9 4,603,633 - yigB LU632_RS24130 0.74 -0.5 4,603,633 - yigB LU632_RS24130 0.74 -0.2 4,603,659 - yigB LU632_RS24130 0.78 -1.0 4,603,694 + yigB LU632_RS24130 0.83 +0.9 4,603,754 + -1.2 4,603,892 + -0.9 4,604,009 + xerC LU632_RS24135 0.21 -0.3 4,604,291 - xerC LU632_RS24135 0.52 +1.3 4,604,632 + xerC LU632_RS24135 0.90 -1.8
Or see this region's nucleotide sequence