Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23805

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
4,540,510	-		LU632_RS23795	0.61	-0.5
4,540,760	+		LU632_RS23795	0.82	+0.3
4,540,761	-		LU632_RS23795	0.82	+0.1
4,540,761	-		LU632_RS23795	0.82	-1.1
4,540,847	+		LU632_RS23795	0.89	-0.3
4,540,847	+		LU632_RS23795	0.89	-0.7
4,540,848	-		LU632_RS23795	0.89	+0.5
4,540,848	-		LU632_RS23795	0.89	+0.5
4,540,898	-				-0.2
4,540,907	+				+2.0
4,540,922	-				+1.7
4,540,922	-				+0.1
4,540,985	+				-0.6
4,540,985	+				+1.9
4,541,122	+		LU632_RS23800	0.42	+0.8
4,541,122	+		LU632_RS23800	0.42	+0.3
4,541,122	+		LU632_RS23800	0.42	-0.3
4,541,123	-		LU632_RS23800	0.42	+1.1
4,541,125	+		LU632_RS23800	0.43	-0.7
4,541,126	-		LU632_RS23800	0.43	+2.0
4,541,135	+		LU632_RS23800	0.45	-0.2
4,541,135	+		LU632_RS23800	0.45	+0.8
4,541,136	-		LU632_RS23800	0.46	+1.1
4,541,136	-		LU632_RS23800	0.46	-0.7
4,541,136	-		LU632_RS23800	0.46	-0.2
4,541,137	+		LU632_RS23800	0.46	-0.3
4,541,495	-		LU632_RS23805	0.23	-0.3
4,541,578	+		LU632_RS23805	0.34	+1.1
4,541,627	+		LU632_RS23805	0.40	+2.7
4,541,628	-		LU632_RS23805	0.41	-0.3
4,541,628	-		LU632_RS23805	0.41	-0.5
4,541,628	-		LU632_RS23805	0.41	-1.5
4,541,628	-		LU632_RS23805	0.41	-0.3
4,541,705	+		LU632_RS23805	0.51	+0.1
4,541,767	+		LU632_RS23805	0.59	+0.4
4,542,078	-				-1.5
4,542,078	-				-1.1
4,542,148	-				+0.7
4,542,149	+				-0.2
4,542,149	+				-0.4
4,542,149	+				+0.7
4,542,150	-				+1.2
4,542,150	-				+0.3
4,542,150	-				-0.3
4,542,150	-				-0.3
4,542,150	-				+0.7
4,542,150	-				-0.1
4,542,150	-				-0.7
4,542,199	-		LU632_RS23810	0.13	-2.7
4,542,199	-		LU632_RS23810	0.13	+1.4
4,542,200	+		LU632_RS23810	0.13	-1.1
4,542,200	+		LU632_RS23810	0.13	-0.6
4,542,200	+		LU632_RS23810	0.13	-0.1
4,542,201	-		LU632_RS23810	0.13	+0.7
4,542,201	-		LU632_RS23810	0.13	+0.7
4,542,201	-		LU632_RS23810	0.13	+2.2
4,542,372	+		LU632_RS23810	0.30	+0.1
4,542,375	+		LU632_RS23810	0.30	-0.2
4,542,476	+		LU632_RS23810	0.41	-0.1
4,542,476	+		LU632_RS23810	0.41	-0.2
4,542,476	+		LU632_RS23810	0.41	-0.6
4,542,476	+		LU632_RS23810	0.41	+0.9
4,542,477	-		LU632_RS23810	0.41	-0.7
4,542,477	-		LU632_RS23810	0.41	+0.7
4,542,477	-		LU632_RS23810	0.41	-1.0
4,542,477	-		LU632_RS23810	0.41	-0.1
4,542,477	-		LU632_RS23810	0.41	+1.2
4,542,480	+		LU632_RS23810	0.41	-1.2
4,542,480	+		LU632_RS23810	0.41	+0.9
4,542,480	+		LU632_RS23810	0.41	-0.9
4,542,480	+		LU632_RS23810	0.41	-0.7
4,542,481	-		LU632_RS23810	0.41	+0.9
4,542,514	-		LU632_RS23810	0.45	+0.1
4,542,515	+		LU632_RS23810	0.45	+0.3
4,542,515	+		LU632_RS23810	0.45	+0.8
4,542,515	+		LU632_RS23810	0.45	+0.1
4,542,516	-		LU632_RS23810	0.45	-1.5
4,542,516	-		LU632_RS23810	0.45	+1.1
4,542,516	-		LU632_RS23810	0.45	+0.3
4,542,709	-		LU632_RS23810	0.65	+0.4
4,542,757	-		LU632_RS23810	0.69	+0.7
4,542,800	+		LU632_RS23810	0.74	-1.3
4,542,830	+		LU632_RS23810	0.77	+0.1
4,542,925	+		LU632_RS23810	0.87	+0.5
4,542,926	-		LU632_RS23810	0.87	+0.1
4,542,963	+				-1.3
4,542,963	+				+1.1
4,542,963	+				-0.8
4,542,963	+				+0.6
4,542,964	-				-1.2
4,542,964	-				+0.7
4,542,964	-				-0.9
4,542,964	-				+1.3
4,542,964	-				+0.4
4,542,964	-				-1.3
4,542,964	-				-0.9
4,542,973	-				-0.7