Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23760

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
4,533,101	-				-0.1
4,533,171	+	pspG	LU632_RS23755	0.29	-0.8
4,533,172	-	pspG	LU632_RS23755	0.29	-0.2
4,533,334	+				+0.4
4,533,356	-				-1.0
4,533,363	-				-1.0
4,533,450	+				+0.9
4,533,451	-				+0.9
4,533,451	-				-0.2
4,533,453	+				-0.1
4,533,453	+				-1.0
4,533,458	+				-0.3
4,533,461	+				-0.5
4,533,464	+				-0.7
4,533,494	-				-0.7
4,533,494	-				+1.5
4,533,544	+				-0.6
4,533,553	-				+0.3
4,533,556	+				+0.5
4,533,556	+				+0.0
4,533,564	+				-1.1
4,533,565	-				-0.3
4,533,676	+				+0.4
4,533,676	+				+1.6
4,533,677	-				+0.2
4,533,682	-				+0.1
4,533,723	+				-0.8
4,533,750	+				+1.1
4,533,802	-				-0.1
4,533,923	+				-0.1
4,534,810	-				-1.1
4,534,811	+				-0.4
4,534,910	+				-0.5
4,534,911	-				+1.1
4,534,911	-				+1.0
4,534,911	-				-0.8
4,534,911	-				-0.4
4,534,913	-				+0.3
4,534,914	+				-0.6
4,534,917	+				+0.1
4,535,003	+				-1.5
4,535,006	+				-0.5
4,535,007	-				-2.0
4,535,007	-				+0.1
4,535,007	-				+0.2
4,535,018	-				-0.9
4,535,018	-				-0.5
4,535,018	-				+0.1
4,535,022	+				+1.1
4,535,028	-				-1.1
4,535,078	-				-0.9
4,535,081	-				-0.1
4,535,111	+				+0.2
4,535,153	+				+1.0
4,535,153	+				+0.9
4,535,153	+				-0.3
4,535,153	+				+0.4
4,535,153	+				+0.1
4,535,154	-				+0.4
4,535,154	-				-0.5
4,535,154	-				-0.2
4,535,315	-				-0.9
4,535,315	-				-0.0
4,535,315	-				+0.5
4,535,346	-				+0.1
4,535,494	+				-1.3
4,535,494	+				+0.0
4,535,596	+	dusA	LU632_RS23765	0.19	-0.2
4,535,596	+	dusA	LU632_RS23765	0.19	-0.5
4,535,596	+	dusA	LU632_RS23765	0.19	+0.6
4,535,597	-	dusA	LU632_RS23765	0.19	-1.6
4,535,597	-	dusA	LU632_RS23765	0.19	+0.1
4,535,652	-	dusA	LU632_RS23765	0.24	+0.7
4,535,652	-	dusA	LU632_RS23765	0.24	-1.0
4,535,734	-	dusA	LU632_RS23765	0.32	+0.9