Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23725

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
4,525,528	+	tnpA	LU632_RS23715	0.62	-0.4
4,525,528	+	tnpA	LU632_RS23715	0.62	+1.1
4,525,528	+	tnpA	LU632_RS23715	0.62	+1.6
4,525,581	+	tnpA	LU632_RS23715	0.75	+0.8
4,525,688	-				+0.6
4,525,688	-				+1.3
4,525,999	-		LU632_RS23720	0.36	+0.7
4,526,077	+		LU632_RS23720	0.55	-0.1
4,526,093	+		LU632_RS23720	0.59	-1.2
4,526,097	+		LU632_RS23720	0.60	-0.4
4,526,268	-				-0.6
4,526,286	+				+1.6
4,526,319	+				+1.6
4,526,319	+				-2.2
4,526,343	+				-0.4
4,526,343	+				+0.6
4,526,390	+				-1.2
4,526,509	-		LU632_RS23725	0.40	-0.7
4,526,509	-		LU632_RS23725	0.40	-1.2
4,526,731	+				+0.6
4,526,795	+				+0.2
4,527,005	+		LU632_RS23730	0.14	+0.8
4,527,129	+		LU632_RS23730	0.21	+0.4
4,527,129	+		LU632_RS23730	0.21	+1.4
4,527,129	+		LU632_RS23730	0.21	+0.5
4,527,130	-		LU632_RS23730	0.21	+1.8
4,527,158	-		LU632_RS23730	0.22	-0.7
4,527,158	-		LU632_RS23730	0.22	-1.4
4,527,254	-		LU632_RS23730	0.27	-0.2
4,527,311	+		LU632_RS23730	0.30	-0.4
4,527,344	+		LU632_RS23730	0.32	-1.3
4,527,421	+		LU632_RS23730	0.36	-2.3
4,527,527	+		LU632_RS23730	0.42	+2.9
4,527,539	-		LU632_RS23730	0.42	-1.3
4,527,579	-		LU632_RS23730	0.44	+1.9
4,527,581	+		LU632_RS23730	0.44	-0.2
4,527,581	+		LU632_RS23730	0.44	+0.9
4,527,582	-		LU632_RS23730	0.44	+0.4
4,527,582	-		LU632_RS23730	0.44	+0.1
4,527,582	-		LU632_RS23730	0.44	-1.2