Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23390

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
4,456,867	-				-1.9
4,456,867	-				+1.6
4,456,915	+		LU632_RS23385	0.11	-0.6
4,456,918	+		LU632_RS23385	0.12	+0.3
4,456,919	-		LU632_RS23385	0.12	-1.5
4,456,927	+		LU632_RS23385	0.13	-2.5
4,457,058	+		LU632_RS23385	0.29	-0.4
4,457,181	+		LU632_RS23385	0.44	+1.1
4,457,181	+		LU632_RS23385	0.44	-0.6
4,457,182	-		LU632_RS23385	0.44	-1.4
4,457,182	-		LU632_RS23385	0.44	-0.3
4,457,246	-		LU632_RS23385	0.52	+3.4
4,457,322	+		LU632_RS23385	0.61	+0.1
4,457,359	+		LU632_RS23385	0.66	-0.0
4,457,437	+		LU632_RS23385	0.76	+0.3
4,457,437	+		LU632_RS23385	0.76	+0.9
4,457,437	+		LU632_RS23385	0.76	+0.6
4,457,437	+		LU632_RS23385	0.76	-1.5
4,457,438	-		LU632_RS23385	0.76	-1.4
4,457,438	-		LU632_RS23385	0.76	-1.3
4,457,438	-		LU632_RS23385	0.76	-0.5
4,457,464	+		LU632_RS23385	0.79	-2.4
4,457,466	+		LU632_RS23385	0.79	+2.0
4,457,467	-		LU632_RS23385	0.79	-0.4
4,457,563	-				+0.6
4,457,567	-				+0.6
4,457,727	+				-1.8
4,457,728	-				-0.6
4,458,639	-		LU632_RS23390	0.87	-0.2
4,458,639	-		LU632_RS23390	0.87	+1.1
4,458,639	-		LU632_RS23390	0.87	+0.6
4,458,639	-		LU632_RS23390	0.87	-0.7
4,458,639	-		LU632_RS23390	0.87	+1.2