Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tauA and LU632_RS22770 are separated by 349 nucleotides LU632_RS22770 and LU632_RS22775 are separated by 59 nucleotides LU632_RS22775 and LU632_RS22780 are separated by 84 nucleotides
LU632_RS22765: tauA - taurine ABC transporter substrate-binding protein, at 4,334,140 to 4,335,096
tauA
LU632_RS22770: LU632_RS22770 - IS5 family transposase, at 4,335,446 to 4,336,191
_RS22770
LU632_RS22775: LU632_RS22775 - LysE family translocator, at 4,336,251 to 4,336,853
_RS22775
LU632_RS22780: LU632_RS22780 - hydrolase, at 4,336,938 to 4,337,900
_RS22780
Position (kb) 4335
4336
4337 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4334.497 kb on + strand, within tauA at 4334.498 kb on - strand, within tauA at 4334.594 kb on + strand, within tauA at 4334.594 kb on + strand, within tauA at 4334.594 kb on + strand, within tauA at 4334.594 kb on + strand, within tauA at 4334.594 kb on + strand, within tauA at 4334.608 kb on - strand, within tauA at 4334.662 kb on + strand, within tauA at 4334.663 kb on - strand, within tauA at 4334.727 kb on + strand, within tauA at 4334.727 kb on + strand, within tauA at 4334.728 kb on - strand, within tauA at 4334.728 kb on - strand, within tauA at 4334.728 kb on - strand, within tauA at 4334.772 kb on + strand, within tauA at 4334.772 kb on + strand, within tauA at 4334.775 kb on + strand, within tauA at 4334.776 kb on - strand, within tauA at 4335.029 kb on + strand at 4335.214 kb on + strand at 4335.244 kb on + strand at 4335.244 kb on + strand at 4335.244 kb on + strand at 4335.248 kb on + strand at 4335.248 kb on + strand at 4335.274 kb on - strand at 4335.282 kb on - strand at 4335.348 kb on - strand at 4335.348 kb on - strand at 4335.348 kb on - strand at 4335.348 kb on - strand at 4335.348 kb on - strand at 4335.382 kb on + strand at 4336.222 kb on + strand at 4336.222 kb on + strand at 4336.224 kb on + strand at 4336.224 kb on + strand at 4336.337 kb on + strand, within LU632_RS22775 at 4336.410 kb on + strand, within LU632_RS22775 at 4336.410 kb on + strand, within LU632_RS22775 at 4336.410 kb on + strand, within LU632_RS22775 at 4336.411 kb on - strand, within LU632_RS22775 at 4336.496 kb on + strand, within LU632_RS22775 at 4336.507 kb on - strand, within LU632_RS22775 at 4336.781 kb on + strand, within LU632_RS22775 at 4336.781 kb on + strand, within LU632_RS22775 at 4336.781 kb on + strand, within LU632_RS22775 at 4336.781 kb on + strand, within LU632_RS22775 at 4336.782 kb on - strand, within LU632_RS22775 at 4336.784 kb on + strand, within LU632_RS22775 at 4336.784 kb on + strand, within LU632_RS22775 at 4336.784 kb on + strand, within LU632_RS22775 at 4336.784 kb on + strand, within LU632_RS22775 at 4336.784 kb on + strand, within LU632_RS22775 at 4336.785 kb on - strand, within LU632_RS22775 at 4336.785 kb on - strand, within LU632_RS22775 at 4336.785 kb on - strand, within LU632_RS22775 at 4336.787 kb on + strand, within LU632_RS22775 at 4336.787 kb on + strand, within LU632_RS22775 at 4336.787 kb on + strand, within LU632_RS22775 at 4336.787 kb on + strand, within LU632_RS22775 at 4336.788 kb on - strand, within LU632_RS22775 at 4336.788 kb on - strand, within LU632_RS22775 at 4336.788 kb on - strand, within LU632_RS22775 at 4336.788 kb on - strand, within LU632_RS22775 at 4336.788 kb on - strand, within LU632_RS22775 at 4336.854 kb on - strand at 4336.902 kb on + strand at 4336.908 kb on + strand at 4336.928 kb on + strand at 4336.945 kb on + strand at 4336.945 kb on + strand at 4337.125 kb on - strand, within LU632_RS22780 at 4337.168 kb on - strand, within LU632_RS22780
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 4,334,497 + tauA LU632_RS22765 0.37 -0.3 4,334,498 - tauA LU632_RS22765 0.37 +1.0 4,334,594 + tauA LU632_RS22765 0.47 -1.8 4,334,594 + tauA LU632_RS22765 0.47 -1.5 4,334,594 + tauA LU632_RS22765 0.47 -1.1 4,334,594 + tauA LU632_RS22765 0.47 +1.8 4,334,594 + tauA LU632_RS22765 0.47 +3.5 4,334,608 - tauA LU632_RS22765 0.49 +0.4 4,334,662 + tauA LU632_RS22765 0.55 +0.6 4,334,663 - tauA LU632_RS22765 0.55 +0.8 4,334,727 + tauA LU632_RS22765 0.61 -1.8 4,334,727 + tauA LU632_RS22765 0.61 -0.2 4,334,728 - tauA LU632_RS22765 0.61 +1.4 4,334,728 - tauA LU632_RS22765 0.61 +3.4 4,334,728 - tauA LU632_RS22765 0.61 -0.6 4,334,772 + tauA LU632_RS22765 0.66 -0.1 4,334,772 + tauA LU632_RS22765 0.66 -0.3 4,334,775 + tauA LU632_RS22765 0.66 -0.0 4,334,776 - tauA LU632_RS22765 0.66 -0.1 4,335,029 + +3.0 4,335,214 + -0.9 4,335,244 + -0.1 4,335,244 + +0.2 4,335,244 + +0.6 4,335,248 + +0.6 4,335,248 + +0.2 4,335,274 - +2.6 4,335,282 - -0.3 4,335,348 - -0.7 4,335,348 - -0.4 4,335,348 - +0.6 4,335,348 - +0.9 4,335,348 - +0.0 4,335,382 + +1.0 4,336,222 + +0.3 4,336,222 + +0.0 4,336,224 + +0.0 4,336,224 + +0.6 4,336,337 + LU632_RS22775 0.14 +4.4 4,336,410 + LU632_RS22775 0.26 -0.4 4,336,410 + LU632_RS22775 0.26 -0.2 4,336,410 + LU632_RS22775 0.26 +2.2 4,336,411 - LU632_RS22775 0.27 +0.8 4,336,496 + LU632_RS22775 0.41 -0.7 4,336,507 - LU632_RS22775 0.42 +1.2 4,336,781 + LU632_RS22775 0.88 -0.3 4,336,781 + LU632_RS22775 0.88 +0.3 4,336,781 + LU632_RS22775 0.88 -0.2 4,336,781 + LU632_RS22775 0.88 -1.6 4,336,782 - LU632_RS22775 0.88 +0.6 4,336,784 + LU632_RS22775 0.88 -0.5 4,336,784 + LU632_RS22775 0.88 -0.1 4,336,784 + LU632_RS22775 0.88 +0.1 4,336,784 + LU632_RS22775 0.88 -0.1 4,336,784 + LU632_RS22775 0.88 +0.3 4,336,785 - LU632_RS22775 0.89 -2.0 4,336,785 - LU632_RS22775 0.89 -0.1 4,336,785 - LU632_RS22775 0.89 +0.9 4,336,787 + LU632_RS22775 0.89 +0.4 4,336,787 + LU632_RS22775 0.89 -0.4 4,336,787 + LU632_RS22775 0.89 -2.3 4,336,787 + LU632_RS22775 0.89 -1.4 4,336,788 - LU632_RS22775 0.89 +0.1 4,336,788 - LU632_RS22775 0.89 +0.9 4,336,788 - LU632_RS22775 0.89 -0.5 4,336,788 - LU632_RS22775 0.89 -1.4 4,336,788 - LU632_RS22775 0.89 +0.3 4,336,854 - -1.1 4,336,902 + +0.4 4,336,908 + +0.0 4,336,928 + -0.4 4,336,945 + -1.2 4,336,945 + +0.4 4,337,125 - LU632_RS22780 0.19 +1.9 4,337,168 - LU632_RS22780 0.24 +1.4
Or see this region's nucleotide sequence