Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22765

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
4,333,179	+	tauC	LU632_RS22755	0.77	+0.5
4,333,180	-	tauC	LU632_RS22755	0.78	+0.3
4,333,254	+	tauC	LU632_RS22755	0.87	+0.9
4,333,255	-	tauC	LU632_RS22755	0.87	-0.8
4,333,356	+				+2.5
4,333,356	+				-0.0
4,333,364	+				-0.3
4,333,404	+				+0.4
4,333,404	+				-1.6
4,333,405	-				+1.3
4,333,405	-				-0.5
4,333,438	+	tauB	LU632_RS22760	0.10	+1.6
4,333,524	-	tauB	LU632_RS22760	0.21	-1.7
4,333,528	+	tauB	LU632_RS22760	0.22	+0.8
4,333,574	-	tauB	LU632_RS22760	0.28	+0.6
4,333,574	-	tauB	LU632_RS22760	0.28	+1.1
4,333,759	+	tauB	LU632_RS22760	0.52	+2.8
4,333,820	+	tauB	LU632_RS22760	0.60	+0.9
4,333,821	-	tauB	LU632_RS22760	0.60	+0.6
4,333,821	-	tauB	LU632_RS22760	0.60	-1.6
4,333,905	-	tauB	LU632_RS22760	0.71	-0.8
4,333,954	+	tauB	LU632_RS22760	0.77	+3.1
4,333,954	+	tauB	LU632_RS22760	0.77	-0.9
4,333,954	+	tauB	LU632_RS22760	0.77	+0.3
4,333,954	+	tauB	LU632_RS22760	0.77	+0.0
4,333,955	-	tauB	LU632_RS22760	0.77	+0.2
4,333,955	-	tauB	LU632_RS22760	0.77	+0.2
4,333,955	-	tauB	LU632_RS22760	0.77	+0.8
4,333,955	-	tauB	LU632_RS22760	0.77	+1.0
4,333,958	-	tauB	LU632_RS22760	0.78	-0.2
4,334,059	+				-0.6
4,334,128	+				-0.6
4,334,128	+				+1.2
4,334,128	+				+0.0
4,334,128	+				-1.2
4,334,129	-				+1.6
4,334,129	-				+1.3
4,334,187	-				+0.6
4,334,211	+				+0.7
4,334,245	-	tauA	LU632_RS22765	0.11	+0.8
4,334,304	+	tauA	LU632_RS22765	0.17	+0.0
4,334,304	+	tauA	LU632_RS22765	0.17	-2.1
4,334,305	-	tauA	LU632_RS22765	0.17	+1.2
4,334,305	-	tauA	LU632_RS22765	0.17	-1.7
4,334,305	-	tauA	LU632_RS22765	0.17	-0.4
4,334,497	+	tauA	LU632_RS22765	0.37	-0.3
4,334,498	-	tauA	LU632_RS22765	0.37	+1.0
4,334,594	+	tauA	LU632_RS22765	0.47	-1.8
4,334,594	+	tauA	LU632_RS22765	0.47	-1.5
4,334,594	+	tauA	LU632_RS22765	0.47	-1.1
4,334,594	+	tauA	LU632_RS22765	0.47	+1.8
4,334,594	+	tauA	LU632_RS22765	0.47	+3.5
4,334,608	-	tauA	LU632_RS22765	0.49	+0.4
4,334,662	+	tauA	LU632_RS22765	0.55	+0.6
4,334,663	-	tauA	LU632_RS22765	0.55	+0.8
4,334,727	+	tauA	LU632_RS22765	0.61	-1.8
4,334,727	+	tauA	LU632_RS22765	0.61	-0.2
4,334,728	-	tauA	LU632_RS22765	0.61	+1.4
4,334,728	-	tauA	LU632_RS22765	0.61	+3.4
4,334,728	-	tauA	LU632_RS22765	0.61	-0.6
4,334,772	+	tauA	LU632_RS22765	0.66	-0.1
4,334,772	+	tauA	LU632_RS22765	0.66	-0.3
4,334,775	+	tauA	LU632_RS22765	0.66	-0.0
4,334,776	-	tauA	LU632_RS22765	0.66	-0.1
4,335,029	+				+3.0
4,335,214	+				-0.9
4,335,244	+				-0.1
4,335,244	+				+0.2
4,335,244	+				+0.6
4,335,248	+				+0.6
4,335,248	+				+0.2
4,335,274	-				+2.6
4,335,282	-				-0.3
4,335,348	-				-0.7
4,335,348	-				-0.4
4,335,348	-				+0.6
4,335,348	-				+0.9
4,335,348	-				+0.0
4,335,382	+				+1.0