Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rsmB and trkA are separated by 46 nucleotides trkA and LU632_RS22490 are separated by 152 nucleotides LU632_RS22490 and LU632_RS22495 are separated by 226 nucleotides LU632_RS22495 and LU632_RS22500 overlap by 32 nucleotides
LU632_RS22480: rsmB - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 4,295,243 to 4,296,532
rsmB
LU632_RS22485: trkA - Trk system potassium transporter TrkA, at 4,296,579 to 4,297,955
trkA
LU632_RS22490: LU632_RS22490 - transposase, at 4,298,108 to 4,298,316
_RS22490
LU632_RS22495: LU632_RS22495 - hypothetical protein, at 4,298,543 to 4,298,779
_RS22495
LU632_RS22500: LU632_RS22500 - DNA adenine methylase, at 4,298,748 to 4,299,533
_RS22500
Position (kb) 4296
4297
4298 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4295.604 kb on + strand, within rsmB at 4295.669 kb on + strand, within rsmB at 4295.680 kb on + strand, within rsmB at 4295.680 kb on + strand, within rsmB at 4295.700 kb on + strand, within rsmB at 4295.769 kb on + strand, within rsmB at 4295.791 kb on + strand, within rsmB at 4295.791 kb on + strand, within rsmB at 4295.792 kb on - strand, within rsmB at 4295.792 kb on - strand, within rsmB at 4295.831 kb on - strand, within rsmB at 4296.020 kb on - strand, within rsmB at 4296.099 kb on + strand, within rsmB at 4296.099 kb on + strand, within rsmB at 4296.124 kb on + strand, within rsmB at 4296.124 kb on + strand, within rsmB at 4296.125 kb on - strand, within rsmB at 4296.125 kb on - strand, within rsmB at 4296.204 kb on + strand, within rsmB at 4296.252 kb on + strand, within rsmB at 4296.252 kb on + strand, within rsmB at 4296.253 kb on - strand, within rsmB at 4296.330 kb on - strand, within rsmB at 4296.351 kb on + strand, within rsmB at 4296.352 kb on - strand, within rsmB at 4296.356 kb on + strand, within rsmB at 4296.356 kb on + strand, within rsmB at 4296.419 kb on - strand at 4296.451 kb on + strand at 4296.452 kb on - strand at 4296.509 kb on + strand at 4296.653 kb on + strand at 4296.654 kb on - strand at 4296.815 kb on + strand, within trkA at 4296.844 kb on + strand, within trkA at 4296.845 kb on - strand, within trkA at 4296.848 kb on + strand, within trkA at 4296.849 kb on - strand, within trkA at 4296.849 kb on - strand, within trkA at 4296.851 kb on + strand, within trkA at 4296.889 kb on - strand, within trkA at 4296.914 kb on + strand, within trkA at 4297.031 kb on + strand, within trkA at 4297.060 kb on - strand, within trkA at 4297.060 kb on - strand, within trkA at 4297.062 kb on + strand, within trkA at 4297.062 kb on + strand, within trkA at 4297.062 kb on + strand, within trkA at 4297.063 kb on - strand, within trkA at 4297.082 kb on + strand, within trkA at 4297.110 kb on - strand, within trkA at 4297.110 kb on - strand, within trkA at 4297.110 kb on - strand, within trkA at 4297.120 kb on + strand, within trkA at 4297.120 kb on + strand, within trkA at 4297.121 kb on - strand, within trkA at 4297.179 kb on - strand, within trkA at 4297.181 kb on + strand, within trkA at 4297.182 kb on - strand, within trkA at 4297.185 kb on - strand, within trkA at 4297.186 kb on + strand, within trkA at 4297.186 kb on + strand, within trkA at 4297.186 kb on - strand, within trkA at 4297.187 kb on - strand, within trkA at 4297.204 kb on + strand, within trkA at 4297.205 kb on - strand, within trkA at 4297.229 kb on + strand, within trkA at 4297.272 kb on + strand, within trkA at 4297.342 kb on - strand, within trkA at 4297.414 kb on + strand, within trkA at 4297.414 kb on + strand, within trkA at 4297.415 kb on - strand, within trkA at 4297.420 kb on - strand, within trkA at 4297.445 kb on - strand, within trkA at 4297.557 kb on - strand, within trkA at 4297.557 kb on - strand, within trkA at 4297.566 kb on - strand, within trkA at 4297.574 kb on + strand, within trkA at 4297.607 kb on - strand, within trkA at 4297.652 kb on - strand, within trkA at 4297.663 kb on + strand, within trkA at 4297.663 kb on + strand, within trkA at 4297.664 kb on - strand, within trkA at 4297.668 kb on - strand, within trkA at 4297.676 kb on + strand, within trkA at 4297.676 kb on + strand, within trkA at 4297.696 kb on + strand, within trkA at 4297.697 kb on - strand, within trkA at 4297.781 kb on + strand, within trkA at 4297.782 kb on - strand, within trkA at 4297.800 kb on - strand, within trkA at 4297.805 kb on + strand, within trkA at 4297.835 kb on - strand at 4297.835 kb on - strand at 4297.848 kb on - strand at 4297.959 kb on - strand at 4297.968 kb on + strand at 4298.075 kb on - strand at 4298.075 kb on - strand at 4298.075 kb on - strand at 4298.398 kb on - strand at 4298.398 kb on - strand at 4298.787 kb on + strand at 4298.907 kb on - strand, within LU632_RS22500
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 4,295,604 + rsmB LU632_RS22480 0.28 -2.5 4,295,669 + rsmB LU632_RS22480 0.33 +0.3 4,295,680 + rsmB LU632_RS22480 0.34 +0.2 4,295,680 + rsmB LU632_RS22480 0.34 +0.0 4,295,700 + rsmB LU632_RS22480 0.35 -2.2 4,295,769 + rsmB LU632_RS22480 0.41 +0.1 4,295,791 + rsmB LU632_RS22480 0.42 -0.5 4,295,791 + rsmB LU632_RS22480 0.42 -0.7 4,295,792 - rsmB LU632_RS22480 0.43 +0.6 4,295,792 - rsmB LU632_RS22480 0.43 -1.0 4,295,831 - rsmB LU632_RS22480 0.46 +0.0 4,296,020 - rsmB LU632_RS22480 0.60 +0.5 4,296,099 + rsmB LU632_RS22480 0.66 +0.4 4,296,099 + rsmB LU632_RS22480 0.66 +1.3 4,296,124 + rsmB LU632_RS22480 0.68 +0.1 4,296,124 + rsmB LU632_RS22480 0.68 +1.3 4,296,125 - rsmB LU632_RS22480 0.68 +0.9 4,296,125 - rsmB LU632_RS22480 0.68 +1.1 4,296,204 + rsmB LU632_RS22480 0.74 -0.2 4,296,252 + rsmB LU632_RS22480 0.78 +0.3 4,296,252 + rsmB LU632_RS22480 0.78 -0.5 4,296,253 - rsmB LU632_RS22480 0.78 -1.4 4,296,330 - rsmB LU632_RS22480 0.84 -0.0 4,296,351 + rsmB LU632_RS22480 0.86 +1.8 4,296,352 - rsmB LU632_RS22480 0.86 +0.4 4,296,356 + rsmB LU632_RS22480 0.86 +0.8 4,296,356 + rsmB LU632_RS22480 0.86 -1.0 4,296,419 - +0.3 4,296,451 + +2.2 4,296,452 - -2.0 4,296,509 + -0.2 4,296,653 + -0.8 4,296,654 - -0.1 4,296,815 + trkA LU632_RS22485 0.17 +0.5 4,296,844 + trkA LU632_RS22485 0.19 -1.0 4,296,845 - trkA LU632_RS22485 0.19 +0.7 4,296,848 + trkA LU632_RS22485 0.20 -0.7 4,296,849 - trkA LU632_RS22485 0.20 -1.1 4,296,849 - trkA LU632_RS22485 0.20 +1.2 4,296,851 + trkA LU632_RS22485 0.20 -0.2 4,296,889 - trkA LU632_RS22485 0.23 +0.8 4,296,914 + trkA LU632_RS22485 0.24 -1.6 4,297,031 + trkA LU632_RS22485 0.33 -0.0 4,297,060 - trkA LU632_RS22485 0.35 +0.8 4,297,060 - trkA LU632_RS22485 0.35 -0.6 4,297,062 + trkA LU632_RS22485 0.35 -1.0 4,297,062 + trkA LU632_RS22485 0.35 -1.5 4,297,062 + trkA LU632_RS22485 0.35 -0.3 4,297,063 - trkA LU632_RS22485 0.35 +0.3 4,297,082 + trkA LU632_RS22485 0.37 -0.4 4,297,110 - trkA LU632_RS22485 0.39 -2.3 4,297,110 - trkA LU632_RS22485 0.39 -1.2 4,297,110 - trkA LU632_RS22485 0.39 +0.0 4,297,120 + trkA LU632_RS22485 0.39 -1.0 4,297,120 + trkA LU632_RS22485 0.39 -0.1 4,297,121 - trkA LU632_RS22485 0.39 +0.3 4,297,179 - trkA LU632_RS22485 0.44 -0.5 4,297,181 + trkA LU632_RS22485 0.44 -1.0 4,297,182 - trkA LU632_RS22485 0.44 -0.2 4,297,185 - trkA LU632_RS22485 0.44 +1.0 4,297,186 + trkA LU632_RS22485 0.44 +0.9 4,297,186 + trkA LU632_RS22485 0.44 -1.1 4,297,186 - trkA LU632_RS22485 0.44 +3.1 4,297,187 - trkA LU632_RS22485 0.44 -0.7 4,297,204 + trkA LU632_RS22485 0.45 +0.7 4,297,205 - trkA LU632_RS22485 0.45 -1.9 4,297,229 + trkA LU632_RS22485 0.47 +0.5 4,297,272 + trkA LU632_RS22485 0.50 -0.4 4,297,342 - trkA LU632_RS22485 0.55 -1.9 4,297,414 + trkA LU632_RS22485 0.61 -0.0 4,297,414 + trkA LU632_RS22485 0.61 -1.2 4,297,415 - trkA LU632_RS22485 0.61 -0.9 4,297,420 - trkA LU632_RS22485 0.61 +0.6 4,297,445 - trkA LU632_RS22485 0.63 +0.1 4,297,557 - trkA LU632_RS22485 0.71 +1.0 4,297,557 - trkA LU632_RS22485 0.71 -2.1 4,297,566 - trkA LU632_RS22485 0.72 -0.3 4,297,574 + trkA LU632_RS22485 0.72 +0.7 4,297,607 - trkA LU632_RS22485 0.75 -0.6 4,297,652 - trkA LU632_RS22485 0.78 +0.5 4,297,663 + trkA LU632_RS22485 0.79 +1.6 4,297,663 + trkA LU632_RS22485 0.79 +0.0 4,297,664 - trkA LU632_RS22485 0.79 +0.2 4,297,668 - trkA LU632_RS22485 0.79 -0.5 4,297,676 + trkA LU632_RS22485 0.80 -0.4 4,297,676 + trkA LU632_RS22485 0.80 -0.6 4,297,696 + trkA LU632_RS22485 0.81 +0.4 4,297,697 - trkA LU632_RS22485 0.81 -1.0 4,297,781 + trkA LU632_RS22485 0.87 -1.2 4,297,782 - trkA LU632_RS22485 0.87 -0.4 4,297,800 - trkA LU632_RS22485 0.89 +0.1 4,297,805 + trkA LU632_RS22485 0.89 -1.0 4,297,835 - +0.1 4,297,835 - -0.4 4,297,848 - +0.6 4,297,959 - +1.2 4,297,968 + +0.9 4,298,075 - -1.0 4,298,075 - -0.0 4,298,075 - -0.3 4,298,398 - +0.7 4,298,398 - -0.1 4,298,787 + +0.0 4,298,907 - LU632_RS22500 0.20 -0.5
Or see this region's nucleotide sequence