Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22355

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
4,268,650	+				+0.2
4,268,916	+		LU632_RS22350	0.12	+0.1
4,268,920	+		LU632_RS22350	0.13	+0.8
4,268,921	-		LU632_RS22350	0.13	-0.3
4,268,981	+		LU632_RS22350	0.21	-0.1
4,269,013	+		LU632_RS22350	0.25	-1.4
4,269,051	-		LU632_RS22350	0.30	-1.0
4,269,051	-		LU632_RS22350	0.30	-1.6
4,269,054	+		LU632_RS22350	0.30	+1.3
4,269,309	-		LU632_RS22350	0.64	-0.1
4,269,309	-		LU632_RS22350	0.64	-0.1
4,269,309	-		LU632_RS22350	0.64	-0.2
4,269,539	-				-1.0
4,269,682	+		LU632_RS22355	0.16	-1.1
4,269,682	+		LU632_RS22355	0.16	-0.7
4,270,067	+		LU632_RS22355	0.76	+0.3
4,270,067	+		LU632_RS22355	0.76	-0.1
4,270,068	-		LU632_RS22355	0.76	+0.5
4,270,108	+		LU632_RS22355	0.82	-0.4
4,270,156	-		LU632_RS22355	0.89	+0.3
4,270,198	+				+1.3
4,270,198	+				-0.5
4,270,199	-				+0.4
4,270,214	-				-0.2
4,270,214	-				+2.9
4,270,215	+				-1.2
4,270,217	+				+0.0
4,270,217	+				-0.2
4,270,218	-				+1.0
4,270,218	-				-0.4
4,270,257	+				-0.7
4,270,285	+				+0.3
4,270,291	+				+0.0
4,270,296	+				-0.4
4,270,296	+				-1.8
4,270,524	+		LU632_RS22360	0.85	+2.6
4,270,524	+		LU632_RS22360	0.85	-0.8
4,270,525	-		LU632_RS22360	0.86	-0.3
4,270,527	-		LU632_RS22360	0.86	+0.3
4,270,717	-				-0.3
4,271,009	-				+0.1
4,271,009	-				+1.8