Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21935

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
4,188,939	+				-3.2
4,188,999	+				-0.2
4,189,000	-				-2.1
4,189,011	-				-1.6
4,189,023	-				-1.6
4,189,023	-				+0.0
4,189,070	+		LU632_RS21930	0.13	-1.7
4,189,070	+		LU632_RS21930	0.13	-0.8
4,189,116	+		LU632_RS21930	0.18	-0.4
4,189,116	+		LU632_RS21930	0.18	+0.0
4,189,116	+		LU632_RS21930	0.18	-1.0
4,189,116	+		LU632_RS21930	0.18	-2.3
4,189,117	-		LU632_RS21930	0.18	+0.4
4,189,117	-		LU632_RS21930	0.18	-0.6
4,189,117	-		LU632_RS21930	0.18	+3.6
4,189,181	+		LU632_RS21930	0.25	+0.0
4,189,181	+		LU632_RS21930	0.25	-0.5
4,189,181	+		LU632_RS21930	0.25	+0.4
4,189,186	-		LU632_RS21930	0.26	+2.2
4,189,212	+		LU632_RS21930	0.29	-1.2
4,189,213	-		LU632_RS21930	0.29	+2.6
4,189,213	-		LU632_RS21930	0.29	-1.0
4,189,213	-		LU632_RS21930	0.29	-0.3
4,189,550	+		LU632_RS21930	0.66	-0.5
4,189,550	+		LU632_RS21930	0.66	+1.6
4,189,550	+		LU632_RS21930	0.66	+1.3
4,189,551	-		LU632_RS21930	0.66	-1.9
4,189,551	-		LU632_RS21930	0.66	-0.4
4,189,572	+		LU632_RS21930	0.68	-0.3
4,189,663	+		LU632_RS21930	0.78	-0.5
4,189,760	-		LU632_RS21930	0.88	+1.2
4,189,827	-				-3.3
4,189,827	-				-0.6
4,189,827	-				-2.7
4,189,846	+				-0.3
4,189,850	+				-0.4
4,189,850	+				+0.9
4,189,864	-				-0.2
4,189,919	+				+0.0
4,189,938	-				-0.2
4,189,948	+				+0.4
4,189,949	-				-0.7
4,189,991	+				+1.8
4,189,992	-				+0.3
4,190,024	+		LU632_RS21935	0.12	+0.1
4,190,025	-		LU632_RS21935	0.12	-0.6
4,190,036	+		LU632_RS21935	0.13	-0.2
4,190,098	+		LU632_RS21935	0.19	-0.3
4,190,098	+		LU632_RS21935	0.19	+0.0
4,190,098	+		LU632_RS21935	0.19	+0.1
4,190,099	-		LU632_RS21935	0.20	-2.5
4,190,154	-		LU632_RS21935	0.25	-0.7
4,190,215	+		LU632_RS21935	0.31	-0.8
4,190,215	+		LU632_RS21935	0.31	-0.0
4,190,216	-		LU632_RS21935	0.31	-1.0
4,190,216	-		LU632_RS21935	0.31	+0.9
4,190,261	+		LU632_RS21935	0.36	-1.4
4,190,458	+		LU632_RS21935	0.56	-0.4
4,190,458	+		LU632_RS21935	0.56	-0.7
4,190,461	+		LU632_RS21935	0.57	-1.3
4,190,461	+		LU632_RS21935	0.57	+1.0
4,190,461	+		LU632_RS21935	0.57	+0.8
4,190,462	-		LU632_RS21935	0.57	+1.2
4,190,462	-		LU632_RS21935	0.57	-1.6
4,190,468	+		LU632_RS21935	0.57	-0.7
4,190,538	-		LU632_RS21935	0.64	+0.4
4,190,556	+		LU632_RS21935	0.66	-0.4
4,190,585	-		LU632_RS21935	0.69	-0.4
4,190,704	+		LU632_RS21935	0.81	-0.9
4,190,704	+		LU632_RS21935	0.81	+0.0
4,190,705	-		LU632_RS21935	0.81	+0.0
4,190,729	-		LU632_RS21935	0.84	-0.1
4,190,861	+				-1.7
4,190,862	-				+0.3
4,190,919	-				-0.1
4,190,919	-				-0.3
4,190,919	-				-0.3
4,190,919	-				-0.4
4,190,983	-				-0.1
4,190,988	+				-0.7
4,190,988	+				-1.4
4,190,989	-				-1.2
4,190,989	-				-0.7
4,191,043	+				-0.4
4,191,045	+				-0.1
4,191,045	+				-0.3
4,191,098	-				-0.2
4,191,391	-		LU632_RS21940	0.20	-0.3
4,191,394	+		LU632_RS21940	0.20	-0.7
4,191,394	+		LU632_RS21940	0.20	-1.4
4,191,638	+		LU632_RS21940	0.42	+0.3
4,191,828	-		LU632_RS21940	0.58	+1.0