Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21685

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
4,146,955	+				-1.5
4,147,791	-				-0.5
4,147,797	-				+0.0
4,147,819	+				-1.8
4,147,819	+				+0.6
4,147,889	+		LU632_RS21685	0.17	-0.8
4,147,915	-		LU632_RS21685	0.24	-0.8
4,147,931	+		LU632_RS21685	0.29	+0.0
4,147,932	-		LU632_RS21685	0.29	-0.2
4,147,934	+		LU632_RS21685	0.29	+1.3
4,147,934	+		LU632_RS21685	0.29	+0.5
4,147,934	+		LU632_RS21685	0.29	+0.3
4,147,935	-		LU632_RS21685	0.30	+1.1
4,147,935	-		LU632_RS21685	0.30	-0.6
4,147,953	-		LU632_RS21685	0.35	-0.7
4,148,091	-		LU632_RS21685	0.74	-0.4
4,148,094	+		LU632_RS21685	0.75	-0.3
4,148,095	-		LU632_RS21685	0.75	-1.3
4,148,198	+				+0.6
4,148,198	+				-0.5
4,148,199	-				+0.4
4,148,245	+				+1.6
4,148,277	-				-0.6
4,148,287	-				-0.1
4,148,307	+				+1.5
4,148,307	+				+0.9
4,148,308	-				+0.0
4,148,308	-				-0.4
4,148,308	-				+3.6
4,148,321	+				-1.2
4,148,330	-				-0.3
4,148,513	-		LU632_RS21690	0.23	-0.4
4,148,951	-		LU632_RS21690	0.77	+1.4
4,149,171	+				+1.0
4,149,171	+				+1.5