Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21645

Experiment: plant=Squash; plant sample=QP3; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfucO and LU632_RS21640 are separated by 237 nucleotidesLU632_RS21640 and LU632_RS21645 overlap by 82 nucleotidesLU632_RS21645 and LU632_RS21650 are separated by 92 nucleotidesLU632_RS21650 and LU632_RS21655 overlap by 14 nucleotides LU632_RS21635: fucO - lactaldehyde reductase, at 4,137,205 to 4,138,356 fucO LU632_RS21640: LU632_RS21640 - IS1 family transposase, at 4,138,594 to 4,139,097 _RS21640 LU632_RS21645: LU632_RS21645 - transposase, at 4,139,016 to 4,139,291 _RS21645 LU632_RS21650: LU632_RS21650 - hypothetical protein, at 4,139,384 to 4,139,737 _RS21650 LU632_RS21655: LU632_RS21655 - pesticin C-terminus-like muramidase, at 4,139,724 to 4,140,371 _RS21655 Position (kb) 4139 4140Strain fitness (log2 ratio) -1 0 1 2at 4138.026 kb on + strand, within fucOat 4138.027 kb on - strand, within fucOat 4138.027 kb on - strand, within fucOat 4138.027 kb on - strand, within fucOat 4138.029 kb on + strand, within fucOat 4138.108 kb on - strand, within fucOat 4138.437 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA
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4,138,026 + fucO LU632_RS21635 0.71 -1.0
4,138,027 - fucO LU632_RS21635 0.71 +1.2
4,138,027 - fucO LU632_RS21635 0.71 -1.4
4,138,027 - fucO LU632_RS21635 0.71 +1.9
4,138,029 + fucO LU632_RS21635 0.72 -0.9
4,138,108 - fucO LU632_RS21635 0.78 -1.6
4,138,437 + +0.4

Or see this region's nucleotide sequence