Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS21630 and fucO are separated by 501 nucleotides fucO and LU632_RS21640 are separated by 237 nucleotides LU632_RS21640 and LU632_RS21645 overlap by 82 nucleotides
LU632_RS21630: LU632_RS21630 - helix-turn-helix domain-containing protein, at 4,136,279 to 4,136,703
_RS21630
LU632_RS21635: fucO - lactaldehyde reductase, at 4,137,205 to 4,138,356
fucO
LU632_RS21640: LU632_RS21640 - IS1 family transposase, at 4,138,594 to 4,139,097
_RS21640
LU632_RS21645: LU632_RS21645 - transposase, at 4,139,016 to 4,139,291
_RS21645
Position (kb) 4137
4138
4139 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4136.593 kb on - strand, within LU632_RS21630 at 4136.947 kb on - strand at 4136.947 kb on - strand at 4137.067 kb on + strand at 4137.067 kb on + strand at 4137.092 kb on + strand at 4137.093 kb on - strand at 4137.101 kb on + strand at 4137.117 kb on + strand at 4137.166 kb on - strand at 4137.185 kb on + strand at 4137.185 kb on + strand at 4137.185 kb on + strand at 4137.186 kb on - strand at 4137.187 kb on + strand at 4137.187 kb on + strand at 4137.209 kb on + strand at 4137.209 kb on + strand at 4137.209 kb on + strand at 4137.210 kb on - strand at 4137.407 kb on + strand, within fucO at 4137.425 kb on - strand, within fucO at 4137.425 kb on - strand, within fucO at 4137.465 kb on + strand, within fucO at 4137.465 kb on + strand, within fucO at 4137.466 kb on - strand, within fucO at 4137.466 kb on - strand, within fucO at 4137.466 kb on - strand, within fucO at 4137.476 kb on + strand, within fucO at 4137.477 kb on - strand, within fucO at 4137.510 kb on + strand, within fucO at 4137.511 kb on - strand, within fucO at 4137.511 kb on - strand, within fucO at 4137.540 kb on + strand, within fucO at 4137.541 kb on - strand, within fucO at 4137.568 kb on - strand, within fucO at 4137.574 kb on + strand, within fucO at 4137.574 kb on + strand, within fucO at 4137.574 kb on + strand, within fucO at 4137.575 kb on - strand, within fucO at 4137.617 kb on + strand, within fucO at 4137.617 kb on + strand, within fucO at 4137.617 kb on + strand, within fucO at 4137.617 kb on + strand, within fucO at 4137.618 kb on - strand, within fucO at 4137.618 kb on - strand, within fucO at 4137.649 kb on - strand, within fucO at 4137.709 kb on + strand, within fucO at 4137.744 kb on + strand, within fucO at 4137.744 kb on + strand, within fucO at 4137.746 kb on + strand, within fucO at 4137.746 kb on + strand, within fucO at 4137.746 kb on + strand, within fucO at 4137.746 kb on + strand, within fucO at 4137.747 kb on - strand, within fucO at 4137.747 kb on - strand, within fucO at 4137.747 kb on - strand, within fucO at 4137.905 kb on + strand, within fucO at 4138.026 kb on + strand, within fucO at 4138.027 kb on - strand, within fucO at 4138.027 kb on - strand, within fucO at 4138.027 kb on - strand, within fucO at 4138.029 kb on + strand, within fucO at 4138.108 kb on - strand, within fucO at 4138.437 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 4,136,593 - LU632_RS21630 0.74 -0.7 4,136,947 - -0.4 4,136,947 - -0.4 4,137,067 + +0.0 4,137,067 + +0.2 4,137,092 + -1.1 4,137,093 - -0.1 4,137,101 + -1.0 4,137,117 + -0.7 4,137,166 - -1.4 4,137,185 + -2.0 4,137,185 + +0.7 4,137,185 + -0.3 4,137,186 - -0.7 4,137,187 + -1.0 4,137,187 + -1.0 4,137,209 + +0.7 4,137,209 + +1.0 4,137,209 + +0.5 4,137,210 - -1.3 4,137,407 + fucO LU632_RS21635 0.18 +0.1 4,137,425 - fucO LU632_RS21635 0.19 -3.2 4,137,425 - fucO LU632_RS21635 0.19 -1.6 4,137,465 + fucO LU632_RS21635 0.23 -0.6 4,137,465 + fucO LU632_RS21635 0.23 -0.5 4,137,466 - fucO LU632_RS21635 0.23 +0.1 4,137,466 - fucO LU632_RS21635 0.23 -0.4 4,137,466 - fucO LU632_RS21635 0.23 -1.1 4,137,476 + fucO LU632_RS21635 0.24 +0.3 4,137,477 - fucO LU632_RS21635 0.24 +0.3 4,137,510 + fucO LU632_RS21635 0.26 +0.3 4,137,511 - fucO LU632_RS21635 0.27 -0.1 4,137,511 - fucO LU632_RS21635 0.27 -0.2 4,137,540 + fucO LU632_RS21635 0.29 +0.2 4,137,541 - fucO LU632_RS21635 0.29 -0.7 4,137,568 - fucO LU632_RS21635 0.32 +0.1 4,137,574 + fucO LU632_RS21635 0.32 -1.2 4,137,574 + fucO LU632_RS21635 0.32 +0.2 4,137,574 + fucO LU632_RS21635 0.32 +0.6 4,137,575 - fucO LU632_RS21635 0.32 -2.5 4,137,617 + fucO LU632_RS21635 0.36 +0.1 4,137,617 + fucO LU632_RS21635 0.36 -1.2 4,137,617 + fucO LU632_RS21635 0.36 +0.5 4,137,617 + fucO LU632_RS21635 0.36 -1.5 4,137,618 - fucO LU632_RS21635 0.36 -0.9 4,137,618 - fucO LU632_RS21635 0.36 +0.4 4,137,649 - fucO LU632_RS21635 0.39 -0.2 4,137,709 + fucO LU632_RS21635 0.44 -0.2 4,137,744 + fucO LU632_RS21635 0.47 +0.1 4,137,744 + fucO LU632_RS21635 0.47 +0.0 4,137,746 + fucO LU632_RS21635 0.47 +1.6 4,137,746 + fucO LU632_RS21635 0.47 +0.9 4,137,746 + fucO LU632_RS21635 0.47 +1.1 4,137,746 + fucO LU632_RS21635 0.47 +0.8 4,137,747 - fucO LU632_RS21635 0.47 -1.0 4,137,747 - fucO LU632_RS21635 0.47 -0.8 4,137,747 - fucO LU632_RS21635 0.47 -0.5 4,137,905 + fucO LU632_RS21635 0.61 +3.9 4,138,026 + fucO LU632_RS21635 0.71 -1.0 4,138,027 - fucO LU632_RS21635 0.71 +1.2 4,138,027 - fucO LU632_RS21635 0.71 -1.4 4,138,027 - fucO LU632_RS21635 0.71 +1.9 4,138,029 + fucO LU632_RS21635 0.72 -0.9 4,138,108 - fucO LU632_RS21635 0.78 -1.6 4,138,437 + +0.4
Or see this region's nucleotide sequence