Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS21550 and LU632_RS21555 are separated by 277 nucleotides LU632_RS21555 and LU632_RS21560 are separated by 986 nucleotides
LU632_RS21550: LU632_RS21550 - hypothetical protein, at 4,121,220 to 4,121,393
_RS21550
LU632_RS21555: LU632_RS21555 - hypothetical protein, at 4,121,671 to 4,126,710
_RS21555
LU632_RS21560: LU632_RS21560 - peptidogalycan biosysnthesis protein, at 4,127,697 to 4,128,365
_RS21560
Position (kb) 4121
4122
4123
4124
4125
4126
4127 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 4120.925 kb on - strand at 4120.946 kb on - strand at 4121.122 kb on + strand at 4121.123 kb on - strand at 4121.167 kb on + strand at 4121.168 kb on - strand at 4121.184 kb on + strand at 4121.185 kb on - strand at 4121.189 kb on + strand at 4121.192 kb on + strand at 4121.196 kb on + strand at 4121.196 kb on + strand at 4121.197 kb on - strand at 4121.197 kb on - strand at 4121.197 kb on - strand at 4121.198 kb on + strand at 4121.198 kb on + strand at 4121.199 kb on - strand at 4121.199 kb on - strand at 4121.258 kb on - strand, within LU632_RS21550 at 4121.258 kb on - strand, within LU632_RS21550 at 4121.299 kb on + strand, within LU632_RS21550 at 4121.374 kb on + strand, within LU632_RS21550 at 4121.375 kb on - strand, within LU632_RS21550 at 4121.384 kb on + strand at 4121.406 kb on - strand at 4121.427 kb on - strand at 4121.435 kb on + strand at 4121.730 kb on + strand at 4121.732 kb on + strand at 4121.733 kb on - strand at 4121.733 kb on - strand at 4121.787 kb on + strand at 4121.787 kb on + strand at 4121.787 kb on + strand at 4121.855 kb on + strand at 4121.855 kb on + strand at 4121.869 kb on + strand at 4121.870 kb on - strand at 4121.895 kb on - strand at 4121.914 kb on - strand at 4122.036 kb on + strand at 4122.037 kb on - strand at 4122.227 kb on + strand, within LU632_RS21555 at 4122.230 kb on - strand, within LU632_RS21555 at 4122.400 kb on - strand, within LU632_RS21555 at 4122.542 kb on + strand, within LU632_RS21555 at 4122.542 kb on + strand, within LU632_RS21555 at 4122.581 kb on + strand, within LU632_RS21555 at 4122.582 kb on - strand, within LU632_RS21555 at 4122.753 kb on - strand, within LU632_RS21555 at 4122.756 kb on + strand, within LU632_RS21555 at 4122.773 kb on + strand, within LU632_RS21555 at 4122.773 kb on + strand, within LU632_RS21555 at 4122.773 kb on + strand, within LU632_RS21555 at 4122.777 kb on + strand, within LU632_RS21555 at 4122.777 kb on + strand, within LU632_RS21555 at 4122.777 kb on + strand, within LU632_RS21555 at 4122.777 kb on + strand, within LU632_RS21555 at 4122.777 kb on + strand, within LU632_RS21555 at 4122.778 kb on - strand, within LU632_RS21555 at 4122.778 kb on - strand, within LU632_RS21555 at 4122.778 kb on - strand, within LU632_RS21555 at 4122.778 kb on - strand, within LU632_RS21555 at 4122.778 kb on - strand, within LU632_RS21555 at 4122.778 kb on - strand, within LU632_RS21555 at 4122.778 kb on - strand, within LU632_RS21555 at 4122.778 kb on - strand, within LU632_RS21555 at 4122.778 kb on - strand, within LU632_RS21555 at 4122.841 kb on - strand, within LU632_RS21555 at 4122.842 kb on + strand, within LU632_RS21555 at 4122.842 kb on + strand, within LU632_RS21555 at 4122.842 kb on + strand, within LU632_RS21555 at 4122.843 kb on - strand, within LU632_RS21555 at 4122.843 kb on - strand, within LU632_RS21555 at 4122.843 kb on - strand, within LU632_RS21555 at 4122.859 kb on + strand, within LU632_RS21555 at 4122.860 kb on - strand, within LU632_RS21555 at 4122.861 kb on + strand, within LU632_RS21555 at 4122.861 kb on + strand, within LU632_RS21555 at 4122.862 kb on - strand, within LU632_RS21555 at 4122.862 kb on - strand, within LU632_RS21555 at 4122.862 kb on - strand, within LU632_RS21555 at 4122.939 kb on + strand, within LU632_RS21555 at 4122.947 kb on + strand, within LU632_RS21555 at 4122.983 kb on + strand, within LU632_RS21555 at 4123.205 kb on + strand, within LU632_RS21555 at 4123.206 kb on - strand, within LU632_RS21555 at 4123.433 kb on + strand, within LU632_RS21555 at 4123.452 kb on + strand, within LU632_RS21555 at 4123.603 kb on - strand, within LU632_RS21555 at 4123.635 kb on + strand, within LU632_RS21555 at 4123.635 kb on + strand, within LU632_RS21555 at 4123.635 kb on + strand, within LU632_RS21555 at 4123.644 kb on - strand, within LU632_RS21555 at 4123.644 kb on - strand, within LU632_RS21555 at 4123.704 kb on + strand, within LU632_RS21555 at 4123.708 kb on + strand, within LU632_RS21555 at 4123.708 kb on + strand, within LU632_RS21555 at 4123.737 kb on + strand, within LU632_RS21555 at 4123.737 kb on + strand, within LU632_RS21555 at 4123.738 kb on - strand, within LU632_RS21555 at 4123.740 kb on - strand, within LU632_RS21555 at 4123.740 kb on - strand, within LU632_RS21555 at 4123.742 kb on + strand, within LU632_RS21555 at 4124.113 kb on - strand, within LU632_RS21555 at 4124.116 kb on + strand, within LU632_RS21555 at 4124.116 kb on + strand, within LU632_RS21555 at 4124.117 kb on - strand, within LU632_RS21555 at 4124.117 kb on - strand, within LU632_RS21555 at 4124.144 kb on + strand, within LU632_RS21555 at 4124.145 kb on - strand, within LU632_RS21555 at 4124.155 kb on - strand, within LU632_RS21555 at 4124.212 kb on - strand, within LU632_RS21555 at 4124.414 kb on - strand, within LU632_RS21555 at 4124.672 kb on + strand, within LU632_RS21555 at 4124.898 kb on + strand, within LU632_RS21555 at 4124.980 kb on + strand, within LU632_RS21555 at 4124.980 kb on + strand, within LU632_RS21555 at 4125.029 kb on - strand, within LU632_RS21555 at 4125.112 kb on - strand, within LU632_RS21555 at 4125.263 kb on + strand, within LU632_RS21555 at 4125.264 kb on + strand, within LU632_RS21555 at 4125.264 kb on + strand, within LU632_RS21555 at 4125.264 kb on + strand, within LU632_RS21555 at 4125.265 kb on - strand, within LU632_RS21555 at 4125.420 kb on + strand, within LU632_RS21555 at 4125.423 kb on - strand, within LU632_RS21555 at 4125.441 kb on - strand, within LU632_RS21555 at 4125.470 kb on + strand, within LU632_RS21555 at 4125.592 kb on + strand, within LU632_RS21555 at 4125.593 kb on - strand, within LU632_RS21555 at 4125.636 kb on + strand, within LU632_RS21555 at 4125.636 kb on + strand, within LU632_RS21555 at 4125.790 kb on - strand, within LU632_RS21555 at 4125.852 kb on - strand, within LU632_RS21555 at 4125.852 kb on - strand, within LU632_RS21555 at 4125.904 kb on - strand, within LU632_RS21555 at 4125.920 kb on + strand, within LU632_RS21555 at 4126.048 kb on - strand, within LU632_RS21555 at 4126.048 kb on - strand, within LU632_RS21555 at 4126.090 kb on - strand, within LU632_RS21555 at 4126.098 kb on + strand, within LU632_RS21555 at 4126.099 kb on - strand, within LU632_RS21555 at 4126.099 kb on - strand, within LU632_RS21555 at 4126.395 kb on + strand at 4126.396 kb on - strand at 4126.407 kb on + strand at 4126.407 kb on + strand at 4126.408 kb on - strand at 4126.514 kb on - strand at 4126.523 kb on + strand at 4126.523 kb on + strand at 4126.563 kb on - strand at 4126.576 kb on - strand at 4126.721 kb on + strand at 4126.784 kb on - strand at 4126.858 kb on + strand at 4126.950 kb on - strand at 4127.092 kb on + strand at 4127.153 kb on - strand at 4127.263 kb on + strand at 4127.263 kb on + strand at 4127.263 kb on + strand at 4127.263 kb on + strand at 4127.263 kb on + strand at 4127.264 kb on - strand at 4127.264 kb on - strand at 4127.268 kb on + strand at 4127.286 kb on - strand at 4127.437 kb on - strand at 4127.456 kb on + strand at 4127.456 kb on + strand at 4127.457 kb on - strand at 4127.458 kb on + strand at 4127.458 kb on + strand at 4127.458 kb on + strand at 4127.458 kb on + strand at 4127.459 kb on - strand at 4127.463 kb on + strand at 4127.524 kb on + strand at 4127.536 kb on + strand at 4127.537 kb on - strand at 4127.607 kb on + strand at 4127.607 kb on + strand at 4127.624 kb on + strand at 4127.669 kb on + strand at 4127.702 kb on - strand at 4127.709 kb on + strand at 4127.709 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 4,120,925 - +0.6 4,120,946 - +0.1 4,121,122 + -2.3 4,121,123 - -1.4 4,121,167 + +0.4 4,121,168 - +0.4 4,121,184 + +1.4 4,121,185 - -0.5 4,121,189 + -0.0 4,121,192 + -0.6 4,121,196 + -0.4 4,121,196 + +0.1 4,121,197 - -2.5 4,121,197 - +1.7 4,121,197 - +0.1 4,121,198 + +0.5 4,121,198 + +1.4 4,121,199 - +0.9 4,121,199 - +0.1 4,121,258 - LU632_RS21550 0.22 -0.4 4,121,258 - LU632_RS21550 0.22 +0.2 4,121,299 + LU632_RS21550 0.45 +0.6 4,121,374 + LU632_RS21550 0.89 +0.7 4,121,375 - LU632_RS21550 0.89 -0.7 4,121,384 + +0.6 4,121,406 - +0.0 4,121,427 - +0.0 4,121,435 + +0.0 4,121,730 + +0.7 4,121,732 + +0.1 4,121,733 - -0.4 4,121,733 - -1.1 4,121,787 + -0.6 4,121,787 + -0.1 4,121,787 + +2.4 4,121,855 + -1.2 4,121,855 + +2.6 4,121,869 + -1.2 4,121,870 - -1.2 4,121,895 - +1.1 4,121,914 - +0.4 4,122,036 + -0.8 4,122,037 - -0.1 4,122,227 + LU632_RS21555 0.11 +0.1 4,122,230 - LU632_RS21555 0.11 +1.6 4,122,400 - LU632_RS21555 0.14 +0.2 4,122,542 + LU632_RS21555 0.17 -0.1 4,122,542 + LU632_RS21555 0.17 -0.4 4,122,581 + LU632_RS21555 0.18 +0.9 4,122,582 - LU632_RS21555 0.18 +1.0 4,122,753 - LU632_RS21555 0.21 -0.5 4,122,756 + LU632_RS21555 0.22 +0.8 4,122,773 + LU632_RS21555 0.22 -0.6 4,122,773 + LU632_RS21555 0.22 +0.0 4,122,773 + LU632_RS21555 0.22 -0.2 4,122,777 + LU632_RS21555 0.22 +0.2 4,122,777 + LU632_RS21555 0.22 +0.3 4,122,777 + LU632_RS21555 0.22 +0.1 4,122,777 + LU632_RS21555 0.22 -1.0 4,122,777 + LU632_RS21555 0.22 -1.2 4,122,778 - LU632_RS21555 0.22 +0.0 4,122,778 - LU632_RS21555 0.22 +0.8 4,122,778 - LU632_RS21555 0.22 +1.4 4,122,778 - LU632_RS21555 0.22 +0.9 4,122,778 - LU632_RS21555 0.22 +0.8 4,122,778 - LU632_RS21555 0.22 +1.6 4,122,778 - LU632_RS21555 0.22 +0.1 4,122,778 - LU632_RS21555 0.22 +2.8 4,122,778 - LU632_RS21555 0.22 +0.0 4,122,841 - LU632_RS21555 0.23 -0.4 4,122,842 + LU632_RS21555 0.23 +1.4 4,122,842 + LU632_RS21555 0.23 +0.6 4,122,842 + LU632_RS21555 0.23 -1.3 4,122,843 - LU632_RS21555 0.23 -2.2 4,122,843 - LU632_RS21555 0.23 -1.4 4,122,843 - LU632_RS21555 0.23 -0.3 4,122,859 + LU632_RS21555 0.24 -0.4 4,122,860 - LU632_RS21555 0.24 +1.0 4,122,861 + LU632_RS21555 0.24 -0.7 4,122,861 + LU632_RS21555 0.24 +2.9 4,122,862 - LU632_RS21555 0.24 +1.5 4,122,862 - LU632_RS21555 0.24 -0.5 4,122,862 - LU632_RS21555 0.24 -0.2 4,122,939 + LU632_RS21555 0.25 -1.6 4,122,947 + LU632_RS21555 0.25 -0.7 4,122,983 + LU632_RS21555 0.26 -0.9 4,123,205 + LU632_RS21555 0.30 -0.3 4,123,206 - LU632_RS21555 0.30 -0.4 4,123,433 + LU632_RS21555 0.35 +0.4 4,123,452 + LU632_RS21555 0.35 +0.7 4,123,603 - LU632_RS21555 0.38 +0.2 4,123,635 + LU632_RS21555 0.39 +0.6 4,123,635 + LU632_RS21555 0.39 +0.0 4,123,635 + LU632_RS21555 0.39 +0.9 4,123,644 - LU632_RS21555 0.39 -0.3 4,123,644 - LU632_RS21555 0.39 -0.7 4,123,704 + LU632_RS21555 0.40 -0.1 4,123,708 + LU632_RS21555 0.40 +1.0 4,123,708 + LU632_RS21555 0.40 +0.0 4,123,737 + LU632_RS21555 0.41 +1.3 4,123,737 + LU632_RS21555 0.41 +6.0 4,123,738 - LU632_RS21555 0.41 +0.2 4,123,740 - LU632_RS21555 0.41 -1.6 4,123,740 - LU632_RS21555 0.41 -1.1 4,123,742 + LU632_RS21555 0.41 +0.1 4,124,113 - LU632_RS21555 0.48 +0.3 4,124,116 + LU632_RS21555 0.49 +0.3 4,124,116 + LU632_RS21555 0.49 +0.2 4,124,117 - LU632_RS21555 0.49 -2.8 4,124,117 - LU632_RS21555 0.49 +0.3 4,124,144 + LU632_RS21555 0.49 +0.6 4,124,145 - LU632_RS21555 0.49 -1.9 4,124,155 - LU632_RS21555 0.49 +0.1 4,124,212 - LU632_RS21555 0.50 +0.7 4,124,414 - LU632_RS21555 0.54 -1.0 4,124,672 + LU632_RS21555 0.60 +1.6 4,124,898 + LU632_RS21555 0.64 -0.2 4,124,980 + LU632_RS21555 0.66 -0.4 4,124,980 + LU632_RS21555 0.66 +0.6 4,125,029 - LU632_RS21555 0.67 +1.4 4,125,112 - LU632_RS21555 0.68 +0.2 4,125,263 + LU632_RS21555 0.71 +1.1 4,125,264 + LU632_RS21555 0.71 -0.2 4,125,264 + LU632_RS21555 0.71 -0.4 4,125,264 + LU632_RS21555 0.71 +0.6 4,125,265 - LU632_RS21555 0.71 -1.9 4,125,420 + LU632_RS21555 0.74 -1.0 4,125,423 - LU632_RS21555 0.74 -0.9 4,125,441 - LU632_RS21555 0.75 -0.0 4,125,470 + LU632_RS21555 0.75 -0.4 4,125,592 + LU632_RS21555 0.78 +0.6 4,125,593 - LU632_RS21555 0.78 -2.0 4,125,636 + LU632_RS21555 0.79 -0.3 4,125,636 + LU632_RS21555 0.79 +0.1 4,125,790 - LU632_RS21555 0.82 -0.5 4,125,852 - LU632_RS21555 0.83 -1.1 4,125,852 - LU632_RS21555 0.83 +1.1 4,125,904 - LU632_RS21555 0.84 +0.6 4,125,920 + LU632_RS21555 0.84 -0.4 4,126,048 - LU632_RS21555 0.87 +0.6 4,126,048 - LU632_RS21555 0.87 -1.1 4,126,090 - LU632_RS21555 0.88 -1.6 4,126,098 + LU632_RS21555 0.88 +1.6 4,126,099 - LU632_RS21555 0.88 -0.3 4,126,099 - LU632_RS21555 0.88 -0.1 4,126,395 + +2.1 4,126,396 - +0.2 4,126,407 + -1.2 4,126,407 + -1.0 4,126,408 - -0.2 4,126,514 - -0.4 4,126,523 + -0.1 4,126,523 + -1.4 4,126,563 - +0.3 4,126,576 - -0.7 4,126,721 + +1.4 4,126,784 - +4.4 4,126,858 + +0.4 4,126,950 - -0.3 4,127,092 + +0.0 4,127,153 - -0.2 4,127,263 + +0.1 4,127,263 + -0.7 4,127,263 + +0.9 4,127,263 + -0.2 4,127,263 + +0.0 4,127,264 - -0.1 4,127,264 - +0.6 4,127,268 + +2.3 4,127,286 - -1.6 4,127,437 - +0.6 4,127,456 + -1.0 4,127,456 + -0.3 4,127,457 - -1.0 4,127,458 + +1.2 4,127,458 + -1.5 4,127,458 + +1.4 4,127,458 + +1.6 4,127,459 - +0.6 4,127,463 + -0.8 4,127,524 + +0.7 4,127,536 + -1.6 4,127,537 - +0.1 4,127,607 + -1.2 4,127,607 + +1.2 4,127,624 + -0.2 4,127,669 + +0.1 4,127,702 - +1.3 4,127,709 + -0.7 4,127,709 + +0.1
Or see this region's nucleotide sequence