Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19830

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
3,767,755	+	metN	LU632_RS19820	0.73	-1.8
3,767,805	-	metN	LU632_RS19820	0.78	+0.5
3,767,873	+	metN	LU632_RS19820	0.85	-0.1
3,767,873	+	metN	LU632_RS19820	0.85	-0.5
3,767,887	-	metN	LU632_RS19820	0.86	-1.1
3,767,887	-	metN	LU632_RS19820	0.86	+0.1
3,767,887	-	metN	LU632_RS19820	0.86	+0.3
3,767,889	+	metN	LU632_RS19820	0.86	+3.5
3,767,889	+	metN	LU632_RS19820	0.86	+0.2
3,767,890	-	metN	LU632_RS19820	0.86	-0.6
3,768,015	-				-0.9
3,768,022	+				+0.9
3,768,040	+				-1.7
3,768,137	+		LU632_RS19825	0.17	-1.7
3,768,138	-		LU632_RS19825	0.18	-0.1
3,768,205	+		LU632_RS19825	0.28	-2.4
3,768,227	-		LU632_RS19825	0.31	-0.2
3,768,234	+		LU632_RS19825	0.32	-0.8
3,768,234	+		LU632_RS19825	0.32	-0.7
3,768,289	-		LU632_RS19825	0.41	-2.8
3,768,303	+		LU632_RS19825	0.43	+0.4
3,768,332	-		LU632_RS19825	0.47	-0.1
3,768,352	+		LU632_RS19825	0.50	-0.6
3,768,357	+		LU632_RS19825	0.51	-0.5
3,768,379	-		LU632_RS19825	0.54	+0.5
3,768,553	-		LU632_RS19825	0.81	-0.1
3,768,553	-		LU632_RS19825	0.81	-0.8
3,768,558	-		LU632_RS19825	0.82	+0.7
3,768,563	+		LU632_RS19825	0.83	-0.6
3,768,564	-		LU632_RS19825	0.83	-2.1
3,768,597	+		LU632_RS19825	0.88	-1.1
3,768,600	+		LU632_RS19825	0.88	-1.3
3,768,600	+		LU632_RS19825	0.88	+0.3
3,768,600	+		LU632_RS19825	0.88	+0.2
3,768,627	+				-1.7
3,768,628	-				-0.0
3,768,670	+				-1.6
3,768,674	+				-0.1
3,768,685	-				+0.7
3,768,685	-				-0.1
3,768,706	+				-0.1
3,768,754	+				-0.9
3,768,769	-				-1.1
3,768,803	-		LU632_RS19830	0.12	-0.2
3,768,804	+		LU632_RS19830	0.12	-0.5
3,768,849	+		LU632_RS19830	0.17	-2.3
3,769,008	-		LU632_RS19830	0.37	-1.3
3,769,008	-		LU632_RS19830	0.37	-1.1
3,769,009	+		LU632_RS19830	0.37	+0.5
3,769,009	+		LU632_RS19830	0.37	-0.0
3,769,009	+		LU632_RS19830	0.37	-2.1
3,769,009	+		LU632_RS19830	0.37	+0.5
3,769,009	+		LU632_RS19830	0.37	-0.4
3,769,009	+		LU632_RS19830	0.37	-1.2
3,769,010	-		LU632_RS19830	0.37	+3.3
3,769,309	+		LU632_RS19830	0.74	-0.2
3,769,309	+		LU632_RS19830	0.74	+0.4
3,769,309	+		LU632_RS19830	0.74	-1.7
3,769,312	+		LU632_RS19830	0.74	-2.2
3,769,312	+		LU632_RS19830	0.74	-0.9
3,769,315	+		LU632_RS19830	0.75	+0.5
3,769,315	+		LU632_RS19830	0.75	+0.1
3,769,315	+		LU632_RS19830	0.75	-1.0
3,769,316	-		LU632_RS19830	0.75	+0.8
3,769,316	-		LU632_RS19830	0.75	-0.4
3,769,319	+		LU632_RS19830	0.75	+0.0
3,769,320	-		LU632_RS19830	0.75	+2.5
3,769,320	-		LU632_RS19830	0.75	-1.7
3,769,414	+		LU632_RS19830	0.87	-0.9
3,769,531	+				-0.3
3,769,603	+				-0.7
3,769,636	+				-1.2
3,769,674	+				-0.8
3,769,723	+	rcsF	LU632_RS19835	0.15	-1.3
3,769,731	-	rcsF	LU632_RS19835	0.17	+0.8
3,769,732	+	rcsF	LU632_RS19835	0.17	-2.0
3,769,732	+	rcsF	LU632_RS19835	0.17	+0.8
3,769,784	-	rcsF	LU632_RS19835	0.30	-0.7
3,769,921	+	rcsF	LU632_RS19835	0.63	+2.1
3,769,958	-	rcsF	LU632_RS19835	0.73	+0.4
3,769,958	-	rcsF	LU632_RS19835	0.73	-0.3
3,769,995	+	rcsF	LU632_RS19835	0.82	-0.1
3,769,996	-	rcsF	LU632_RS19835	0.82	+2.2
3,770,148	+	tsaA	LU632_RS19840	0.12	+0.2
3,770,177	+	tsaA	LU632_RS19840	0.16	+0.6
3,770,177	+	tsaA	LU632_RS19840	0.16	+0.2
3,770,188	+	tsaA	LU632_RS19840	0.17	-0.2
3,770,188	+	tsaA	LU632_RS19840	0.17	+0.5
3,770,232	+	tsaA	LU632_RS19840	0.24	+0.4
3,770,232	+	tsaA	LU632_RS19840	0.24	-0.1
3,770,232	+	tsaA	LU632_RS19840	0.24	+0.8
3,770,232	+	tsaA	LU632_RS19840	0.24	-1.4
3,770,232	+	tsaA	LU632_RS19840	0.24	-0.6
3,770,232	+	tsaA	LU632_RS19840	0.24	-0.4
3,770,232	+	tsaA	LU632_RS19840	0.24	+0.6
3,770,232	+	tsaA	LU632_RS19840	0.24	+0.8
3,770,233	-	tsaA	LU632_RS19840	0.24	+0.3
3,770,233	-	tsaA	LU632_RS19840	0.24	+0.2
3,770,233	-	tsaA	LU632_RS19840	0.24	-0.5
3,770,233	-	tsaA	LU632_RS19840	0.24	-0.1
3,770,233	-	tsaA	LU632_RS19840	0.24	+0.7
3,770,234	+	tsaA	LU632_RS19840	0.24	-0.1
3,770,234	+	tsaA	LU632_RS19840	0.24	-0.5
3,770,234	+	tsaA	LU632_RS19840	0.24	+0.2
3,770,234	+	tsaA	LU632_RS19840	0.24	-1.1
3,770,234	+	tsaA	LU632_RS19840	0.24	-0.2
3,770,234	+	tsaA	LU632_RS19840	0.24	-0.2
3,770,234	+	tsaA	LU632_RS19840	0.24	+0.9
3,770,235	-	tsaA	LU632_RS19840	0.24	-0.8
3,770,235	-	tsaA	LU632_RS19840	0.24	-1.3
3,770,235	-	tsaA	LU632_RS19840	0.24	+1.9
3,770,235	-	tsaA	LU632_RS19840	0.24	+0.5
3,770,235	-	tsaA	LU632_RS19840	0.24	+0.0
3,770,235	-	tsaA	LU632_RS19840	0.24	-0.8
3,770,235	-	tsaA	LU632_RS19840	0.24	-0.2
3,770,235	-	tsaA	LU632_RS19840	0.24	+0.5
3,770,263	-	tsaA	LU632_RS19840	0.28	-0.3
3,770,322	-	tsaA	LU632_RS19840	0.36	-1.3
3,770,469	+	tsaA	LU632_RS19840	0.57	+0.3
3,770,476	+	tsaA	LU632_RS19840	0.58	-1.3