Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19720

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
3,745,477	+				+0.2
3,745,511	-				+0.9
3,745,513	-				+1.1
3,745,513	-				-0.2
3,745,620	-				-0.5
3,745,663	+				+0.9
3,745,664	-				-0.8
3,745,664	-				+0.6
3,745,664	-				-2.0
3,745,664	-				-0.0
3,745,667	+				+0.4
3,745,668	-				+0.5
3,745,689	+				-3.2
3,745,787	+	fpr	LU632_RS19715	0.11	-1.5
3,745,787	+	fpr	LU632_RS19715	0.11	-0.3
3,745,833	-	fpr	LU632_RS19715	0.17	+1.2
3,745,900	+	fpr	LU632_RS19715	0.26	+0.2
3,746,065	+	fpr	LU632_RS19715	0.48	-0.4
3,746,066	-	fpr	LU632_RS19715	0.48	-1.3
3,746,066	-	fpr	LU632_RS19715	0.48	+0.8
3,746,075	+	fpr	LU632_RS19715	0.50	-1.3
3,746,078	+	fpr	LU632_RS19715	0.50	+0.9
3,746,188	+	fpr	LU632_RS19715	0.65	-0.6
3,746,201	+	fpr	LU632_RS19715	0.66	+0.3
3,746,201	+	fpr	LU632_RS19715	0.66	+0.3
3,746,205	+	fpr	LU632_RS19715	0.67	+0.7
3,746,308	-	fpr	LU632_RS19715	0.81	-0.5
3,746,328	+	fpr	LU632_RS19715	0.83	-0.6
3,746,328	+	fpr	LU632_RS19715	0.83	-1.4
3,746,331	+	fpr	LU632_RS19715	0.84	-0.1
3,746,331	+	fpr	LU632_RS19715	0.84	+0.5
3,746,331	+	fpr	LU632_RS19715	0.84	+0.0
3,746,331	+	fpr	LU632_RS19715	0.84	-0.5
3,746,331	+	fpr	LU632_RS19715	0.84	+1.1
3,746,332	-	fpr	LU632_RS19715	0.84	-0.2
3,746,332	-	fpr	LU632_RS19715	0.84	+0.2
3,746,332	-	fpr	LU632_RS19715	0.84	+1.0
3,746,332	-	fpr	LU632_RS19715	0.84	-1.9
3,746,337	-	fpr	LU632_RS19715	0.85	-0.6
3,746,376	-	fpr	LU632_RS19715	0.90	-0.5
3,746,410	-				-1.9
3,746,428	-				-1.7
3,746,444	-				-0.7
3,746,444	-				+0.5
3,746,449	+				+0.2
3,746,473	+				+0.3
3,746,473	+				+0.4
3,746,499	+		LU632_RS19720	0.11	-0.5
3,746,669	+		LU632_RS19720	0.52	+0.3
3,746,670	-		LU632_RS19720	0.52	+1.4
3,746,755	-		LU632_RS19720	0.73	-0.4
3,746,997	-				-0.1
3,747,136	+		LU632_RS19725	0.25	-0.1
3,747,245	-		LU632_RS19725	0.44	-0.5
3,747,282	+		LU632_RS19725	0.51	-0.5
3,747,355	+		LU632_RS19725	0.64	+1.5
3,747,355	+		LU632_RS19725	0.64	+0.0
3,747,355	+		LU632_RS19725	0.64	-0.7
3,747,355	+		LU632_RS19725	0.64	-0.9
3,747,393	-		LU632_RS19725	0.70	-2.1
3,747,393	-		LU632_RS19725	0.70	+0.4
3,747,537	+				-2.2
3,747,537	+				-1.5
3,747,611	+				+0.3
3,747,613	+				+0.2
3,747,613	+				-0.3
3,747,613	+				-0.2
3,747,627	+				+1.4