Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19445

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
3,681,930	-				-0.0
3,682,058	-				+2.3
3,682,071	-				-0.6
3,682,074	-				-0.5
3,682,076	+				-0.2
3,682,185	+				-0.4
3,682,186	-				+0.8
3,682,186	-				-0.3
3,682,209	-				-0.7
3,682,218	+				-0.7
3,682,235	+				-0.5
3,682,370	-				+0.4
3,682,425	+				-0.4
3,682,449	+				-0.5
3,682,500	+				-0.7
3,682,545	+				+0.3
3,682,556	+				+1.3
3,682,616	+		LU632_RS19445	0.14	+0.4
3,682,656	-		LU632_RS19445	0.18	+0.1
3,682,670	+		LU632_RS19445	0.19	-0.3
3,682,703	-		LU632_RS19445	0.22	+0.1
3,682,705	+		LU632_RS19445	0.22	-0.0
3,682,815	-		LU632_RS19445	0.31	-0.1
3,682,836	+		LU632_RS19445	0.33	+0.2
3,682,836	+		LU632_RS19445	0.33	-0.8
3,682,836	+		LU632_RS19445	0.33	+0.4
3,682,836	+		LU632_RS19445	0.33	-0.5
3,682,837	-		LU632_RS19445	0.33	-0.5
3,682,837	-		LU632_RS19445	0.33	+0.7
3,682,837	-		LU632_RS19445	0.33	-1.3
3,682,837	-		LU632_RS19445	0.33	-1.5
3,682,837	-		LU632_RS19445	0.33	+0.5
3,682,841	-		LU632_RS19445	0.33	-1.1
3,682,841	-		LU632_RS19445	0.33	+1.0
3,682,950	-		LU632_RS19445	0.42	-1.5
3,682,960	+		LU632_RS19445	0.43	-0.7
3,683,021	+		LU632_RS19445	0.48	+0.5
3,683,041	+		LU632_RS19445	0.50	-0.7
3,683,042	-		LU632_RS19445	0.50	+1.5
3,683,088	-		LU632_RS19445	0.54	-0.4
3,683,143	+		LU632_RS19445	0.59	+1.5
3,683,143	+		LU632_RS19445	0.59	+0.2
3,683,144	-		LU632_RS19445	0.59	-0.5
3,683,362	+		LU632_RS19445	0.77	+2.3
3,683,437	+		LU632_RS19445	0.83	-0.1
3,683,437	+		LU632_RS19445	0.83	-0.8
3,683,437	+		LU632_RS19445	0.83	-1.1
3,683,437	+		LU632_RS19445	0.83	+0.8
3,683,438	-		LU632_RS19445	0.84	-0.8
3,683,634	-				-0.8
3,683,669	+				+0.6
3,683,676	+				+0.3
3,683,676	+				-1.4
3,683,677	-				+0.4
3,683,677	-				+1.2
3,683,677	-				+1.4
3,683,712	-				+0.3
3,683,712	-				+1.1
3,683,889	+				+1.5
3,683,890	-				+1.5
3,684,077	-	pitA	LU632_RS19450	0.15	+1.5
3,684,267	-	pitA	LU632_RS19450	0.27	-0.5
3,684,284	+	pitA	LU632_RS19450	0.28	+1.9
3,684,296	+	pitA	LU632_RS19450	0.29	-1.1
3,684,564	+	pitA	LU632_RS19450	0.47	+1.5
3,684,567	+	pitA	LU632_RS19450	0.47	+1.5
3,684,612	+	pitA	LU632_RS19450	0.50	+1.5