Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18365

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
3,470,086	+				-0.4
3,470,086	+				+0.9
3,470,121	+				-0.1
3,470,122	-				-0.8
3,470,216	+	bolA	LU632_RS18360	0.26	-0.7
3,470,217	-	bolA	LU632_RS18360	0.27	+0.3
3,470,217	-	bolA	LU632_RS18360	0.27	+0.6
3,470,269	+	bolA	LU632_RS18360	0.43	-0.1
3,470,270	-	bolA	LU632_RS18360	0.43	+0.7
3,470,333	+	bolA	LU632_RS18360	0.63	+1.5
3,470,334	-	bolA	LU632_RS18360	0.64	-0.5
3,470,447	+				-0.8
3,470,454	-				-2.4
3,470,500	+				+0.8
3,470,501	-				+0.4
3,470,558	+				+0.2
3,470,593	+				+1.5
3,470,610	+				-0.4
3,470,701	+		LU632_RS18365	0.15	-1.1
3,470,731	+		LU632_RS18365	0.20	-0.1
3,470,815	-		LU632_RS18365	0.35	-1.1
3,470,891	+		LU632_RS18365	0.48	-1.8
3,470,892	-		LU632_RS18365	0.48	-0.4
3,470,945	+		LU632_RS18365	0.57	+1.3
3,470,945	+		LU632_RS18365	0.57	+0.1
3,470,946	-		LU632_RS18365	0.57	+0.4
3,470,946	-		LU632_RS18365	0.57	-1.6
3,470,946	-		LU632_RS18365	0.57	-0.0
3,470,946	-		LU632_RS18365	0.57	-0.1
3,470,980	+		LU632_RS18365	0.63	-0.8
3,470,981	-		LU632_RS18365	0.63	+0.3
3,470,981	-		LU632_RS18365	0.63	+0.6
3,470,999	-		LU632_RS18365	0.66	-0.8
3,471,032	-		LU632_RS18365	0.72	+0.1
3,471,059	+		LU632_RS18365	0.77	-0.3
3,471,060	-		LU632_RS18365	0.77	-0.5
3,471,061	+		LU632_RS18365	0.77	+0.4
3,471,067	-		LU632_RS18365	0.78	+0.9
3,471,067	-		LU632_RS18365	0.78	-1.0
3,471,067	-		LU632_RS18365	0.78	-0.4
3,471,067	-		LU632_RS18365	0.78	-1.5
3,471,264	+				-1.5
3,471,296	+				-0.5
3,471,296	+				+1.5
3,471,340	+				+1.6
3,471,462	+				+0.6
3,471,463	-				+0.5
3,471,463	-				+0.6
3,471,503	-	ampG	LU632_RS18370	0.12	-0.1
3,471,503	-	ampG	LU632_RS18370	0.12	-0.9
3,471,702	+	ampG	LU632_RS18370	0.25	+0.7
3,471,703	-	ampG	LU632_RS18370	0.26	-0.6
3,471,835	+	ampG	LU632_RS18370	0.35	-0.4
3,471,836	-	ampG	LU632_RS18370	0.35	+0.5
3,471,898	-	ampG	LU632_RS18370	0.39	-0.1
3,471,898	-	ampG	LU632_RS18370	0.39	-1.3
3,471,990	+	ampG	LU632_RS18370	0.45	-0.6
3,471,991	-	ampG	LU632_RS18370	0.45	+1.8
3,472,016	+	ampG	LU632_RS18370	0.47	-0.8
3,472,017	-	ampG	LU632_RS18370	0.47	-2.5
3,472,017	-	ampG	LU632_RS18370	0.47	-0.1
3,472,029	+	ampG	LU632_RS18370	0.48	-0.3
3,472,029	+	ampG	LU632_RS18370	0.48	-0.1
3,472,029	+	ampG	LU632_RS18370	0.48	-0.2
3,472,029	+	ampG	LU632_RS18370	0.48	-1.6
3,472,192	+	ampG	LU632_RS18370	0.59	-0.2
3,472,193	-	ampG	LU632_RS18370	0.59	+0.1