Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18145

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
3,429,240	+				+2.8
3,429,241	-				+3.9
3,429,241	-				-2.1
3,429,241	-				-0.2
3,429,850	+	apt	LU632_RS18140	0.67	+0.7
3,429,851	-	apt	LU632_RS18140	0.67	-0.5
3,429,862	-	apt	LU632_RS18140	0.69	+1.1
3,429,892	+	apt	LU632_RS18140	0.74	+1.7
3,429,990	+				+3.6
3,430,052	-				-0.3
3,430,205	+				-0.0
3,430,229	+				+0.9
3,430,230	-				-0.9
3,430,651	-		LU632_RS18145	0.78	-0.5
3,430,765	+				-1.7
3,430,780	-				+1.1
3,430,980	-				+0.1
3,430,985	-				+0.2
3,431,002	+				-0.1
3,431,002	+				-0.7
3,431,003	-				-1.0
3,431,278	-		LU632_RS18150	0.33	+0.5
3,431,464	+		LU632_RS18150	0.55	-0.4
3,431,464	+		LU632_RS18150	0.55	+0.5
3,431,464	+		LU632_RS18150	0.55	-0.5
3,431,464	+		LU632_RS18150	0.55	+1.1
3,431,464	+		LU632_RS18150	0.55	+0.5
3,431,466	+		LU632_RS18150	0.55	+0.5
3,431,467	-		LU632_RS18150	0.55	-0.2
3,431,506	+		LU632_RS18150	0.60	-0.3
3,431,507	-		LU632_RS18150	0.60	+0.3
3,431,507	-		LU632_RS18150	0.60	-0.9
3,431,507	-		LU632_RS18150	0.60	+0.6
3,431,507	-		LU632_RS18150	0.60	-0.6
3,431,557	+		LU632_RS18150	0.66	+0.4
3,431,624	+		LU632_RS18150	0.74	-0.4
3,431,689	+		LU632_RS18150	0.82	+0.3
3,431,729	+		LU632_RS18150	0.86	+0.6
3,431,743	-		LU632_RS18150	0.88	-1.0
3,431,746	+		LU632_RS18150	0.89	-0.3
3,431,746	+		LU632_RS18150	0.89	-0.7
3,431,747	-		LU632_RS18150	0.89	-0.5
3,431,747	-		LU632_RS18150	0.89	-0.3
3,431,750	+		LU632_RS18150	0.89	+0.3
3,431,750	+		LU632_RS18150	0.89	+0.3
3,431,750	+		LU632_RS18150	0.89	-1.3