Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18110

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
3,421,995	+	htpG	LU632_RS18100	0.85	-0.8
3,422,043	+	htpG	LU632_RS18100	0.88	-1.0
3,422,044	-	htpG	LU632_RS18100	0.88	+2.1
3,422,265	+				-0.1
3,422,289	+				+1.5
3,422,299	-				-1.3
3,422,302	-				-2.4
3,422,511	+	recR	LU632_RS18105	0.23	-0.6
3,422,511	+	recR	LU632_RS18105	0.23	-0.3
3,422,511	+	recR	LU632_RS18105	0.23	+0.5
3,422,511	+	recR	LU632_RS18105	0.23	+0.3
3,422,512	-	recR	LU632_RS18105	0.23	-0.1
3,422,512	-	recR	LU632_RS18105	0.23	-1.0
3,422,512	-	recR	LU632_RS18105	0.23	-0.3
3,422,516	-	recR	LU632_RS18105	0.24	+2.3
3,422,665	-	recR	LU632_RS18105	0.48	+1.5
3,422,768	-	recR	LU632_RS18105	0.65	-1.2
3,423,236	-		LU632_RS18110	0.78	+2.9
3,423,306	+				-1.3
3,423,306	+				-2.2
3,423,307	-				-0.3
3,423,307	-				-0.6
3,423,307	-				+0.8