Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18060

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
3,409,552	+				+3.2
3,409,552	+				+0.8
3,409,573	+				+0.3
3,410,355	-		LU632_RS18060	0.13	-0.1
3,410,355	-		LU632_RS18060	0.13	-0.8
3,410,468	-		LU632_RS18060	0.59	-2.5
3,410,468	-		LU632_RS18060	0.59	-0.9
3,410,508	-		LU632_RS18060	0.76	-0.1
3,410,508	-		LU632_RS18060	0.76	-0.3
3,410,508	-		LU632_RS18060	0.76	-1.2
3,410,541	+		LU632_RS18060	0.89	-1.4
3,410,541	+		LU632_RS18060	0.89	-0.7
3,410,781	+				+0.5
3,410,806	+				+0.0
3,410,807	-				+1.3
3,410,999	+				+1.5
3,410,999	+				+1.5
3,410,999	+				+0.1
3,410,999	+				+0.7
3,410,999	+				-0.2
3,410,999	+				+0.5
3,411,042	-				+2.4
3,411,248	+	ushA	LU632_RS18065	0.19	+0.7
3,411,248	+	ushA	LU632_RS18065	0.19	+0.1
3,411,249	-	ushA	LU632_RS18065	0.19	-1.0
3,411,281	+	ushA	LU632_RS18065	0.21	-0.1
3,411,282	-	ushA	LU632_RS18065	0.21	-0.7
3,411,282	-	ushA	LU632_RS18065	0.21	-1.3
3,411,326	+	ushA	LU632_RS18065	0.24	-0.9
3,411,330	+	ushA	LU632_RS18065	0.24	+0.4
3,411,331	-	ushA	LU632_RS18065	0.24	+0.1
3,411,495	+	ushA	LU632_RS18065	0.34	+3.5
3,411,495	+	ushA	LU632_RS18065	0.34	-0.8
3,411,495	+	ushA	LU632_RS18065	0.34	-1.3
3,411,495	+	ushA	LU632_RS18065	0.34	-0.2
3,411,496	-	ushA	LU632_RS18065	0.34	+1.1
3,411,496	-	ushA	LU632_RS18065	0.34	+1.5
3,411,496	-	ushA	LU632_RS18065	0.34	-0.1
3,411,499	+	ushA	LU632_RS18065	0.34	+0.3
3,411,499	+	ushA	LU632_RS18065	0.34	-0.7
3,411,500	-	ushA	LU632_RS18065	0.34	+2.4
3,411,500	-	ushA	LU632_RS18065	0.34	-0.9
3,411,500	-	ushA	LU632_RS18065	0.34	-1.4