Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17610

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
3,307,889	+		LU632_RS17600	0.79	-0.1
3,307,979	-		LU632_RS17600	0.85	+0.8
3,308,162	+				-0.5
3,308,271	+				-0.1
3,308,271	+				-1.7
3,308,272	-				+1.4
3,308,295	+				-0.0
3,308,295	+				-0.6
3,308,296	-				-0.3
3,308,296	-				+0.0
3,308,296	-				+2.6
3,308,781	+				-1.5
3,308,783	+				+0.1
3,308,783	+				-0.0
3,308,783	+				+0.1
3,308,784	-				-0.4
3,308,912	-				+0.2
3,309,043	-	yejK	LU632_RS17610	0.16	-0.5
3,309,060	+	yejK	LU632_RS17610	0.17	+0.8
3,309,061	-	yejK	LU632_RS17610	0.17	-0.2
3,309,206	+	yejK	LU632_RS17610	0.32	-0.1
3,309,206	+	yejK	LU632_RS17610	0.32	+0.4
3,309,207	-	yejK	LU632_RS17610	0.32	+0.9
3,309,212	+	yejK	LU632_RS17610	0.32	+1.0
3,309,213	-	yejK	LU632_RS17610	0.32	+8.4
3,309,213	-	yejK	LU632_RS17610	0.32	+0.0
3,309,473	+	yejK	LU632_RS17610	0.58	-0.5
3,309,509	+	yejK	LU632_RS17610	0.62	+0.6
3,309,509	+	yejK	LU632_RS17610	0.62	-2.9
3,309,509	+	yejK	LU632_RS17610	0.62	-0.5
3,309,509	+	yejK	LU632_RS17610	0.62	-0.7
3,309,509	+	yejK	LU632_RS17610	0.62	+0.1
3,309,510	+	yejK	LU632_RS17610	0.62	-1.5
3,309,510	-	yejK	LU632_RS17610	0.62	-0.9
3,309,510	-	yejK	LU632_RS17610	0.62	-0.5
3,309,510	-	yejK	LU632_RS17610	0.62	+0.9
3,309,725	-	yejK	LU632_RS17610	0.83	-1.7
3,309,750	+	yejK	LU632_RS17610	0.86	+0.2
3,309,777	+	yejK	LU632_RS17610	0.89	-0.8
3,309,778	-	yejK	LU632_RS17610	0.89	+0.1
3,309,851	-				+0.5
3,309,891	+				+1.0
3,309,892	-				-0.4
3,309,894	+				+1.8
3,309,895	-				+1.5
3,309,908	+				-2.0
3,309,909	-				-1.1
3,309,909	-				-0.9
3,309,909	-				+0.6
3,309,964	-				+1.5
3,309,974	-				+0.5
3,310,051	+				+0.6
3,310,070	+				+0.5
3,310,168	+		LU632_RS17615	0.51	-0.4
3,310,168	+		LU632_RS17615	0.51	-0.2