Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17600

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
3,305,570	-				+0.5
3,305,690	+	rsuA	LU632_RS17595	0.18	+0.5
3,305,690	+	rsuA	LU632_RS17595	0.18	-1.1
3,305,691	-	rsuA	LU632_RS17595	0.18	+0.5
3,305,691	-	rsuA	LU632_RS17595	0.18	-0.2
3,305,700	-	rsuA	LU632_RS17595	0.19	+0.6
3,305,725	+	rsuA	LU632_RS17595	0.22	+0.6
3,305,726	-	rsuA	LU632_RS17595	0.23	+0.0
3,305,726	-	rsuA	LU632_RS17595	0.23	+0.9
3,305,726	-	rsuA	LU632_RS17595	0.23	+1.5
3,305,726	-	rsuA	LU632_RS17595	0.23	+1.0
3,305,743	-	rsuA	LU632_RS17595	0.25	+0.1
3,305,759	-	rsuA	LU632_RS17595	0.27	+0.5
3,305,825	-	rsuA	LU632_RS17595	0.36	+2.2
3,306,019	+	rsuA	LU632_RS17595	0.63	-0.4
3,306,100	+	rsuA	LU632_RS17595	0.74	+0.5
3,306,101	-	rsuA	LU632_RS17595	0.74	-0.2
3,306,101	-	rsuA	LU632_RS17595	0.74	+0.7
3,306,144	+	rsuA	LU632_RS17595	0.80	+1.5
3,306,144	+	rsuA	LU632_RS17595	0.80	+0.8
3,306,224	+				-1.9
3,306,224	+				+0.5
3,306,224	+				+0.4
3,306,225	-				+0.1
3,306,377	+				+1.1
3,306,399	+				+0.9
3,306,399	+				-0.1
3,306,399	+				+1.3
3,306,399	+				-0.8
3,306,400	-				+0.7
3,306,401	+				-0.6
3,306,461	-				+0.2
3,306,461	-				+0.2
3,306,461	-				+1.6
3,306,505	-				+1.0
3,306,510	-				-1.0
3,306,540	+				-1.0
3,306,541	-				-0.3
3,306,546	+				-0.9
3,306,547	-				-0.7
3,306,550	+				-0.6
3,306,551	-				-0.1
3,306,551	-				+0.3
3,306,669	+				+0.0
3,306,773	+		LU632_RS17600	0.16	-0.1
3,306,773	+		LU632_RS17600	0.16	+0.1
3,306,834	-		LU632_RS17600	0.19	-1.1
3,306,837	+		LU632_RS17600	0.19	+0.9
3,306,857	+		LU632_RS17600	0.21	-1.1
3,306,901	+		LU632_RS17600	0.23	-0.1
3,306,911	+		LU632_RS17600	0.24	-0.7
3,306,978	-		LU632_RS17600	0.27	+1.0
3,306,978	-		LU632_RS17600	0.27	-0.8
3,306,978	-		LU632_RS17600	0.27	-0.7
3,306,979	+		LU632_RS17600	0.28	+0.4
3,306,979	+		LU632_RS17600	0.28	-0.7
3,306,980	-		LU632_RS17600	0.28	-0.9
3,306,980	-		LU632_RS17600	0.28	-0.4
3,307,039	-		LU632_RS17600	0.31	-2.4
3,307,043	-		LU632_RS17600	0.31	-0.3
3,307,060	+		LU632_RS17600	0.32	+0.3
3,307,060	+		LU632_RS17600	0.32	-0.5
3,307,062	+		LU632_RS17600	0.32	-0.6
3,307,062	+		LU632_RS17600	0.32	+0.9
3,307,063	-		LU632_RS17600	0.32	-0.3
3,307,204	-		LU632_RS17600	0.40	-0.1
3,307,207	-		LU632_RS17600	0.41	+0.0
3,307,381	-		LU632_RS17600	0.50	-1.1
3,307,558	+		LU632_RS17600	0.61	+0.4
3,307,559	-		LU632_RS17600	0.61	+0.7
3,307,559	-		LU632_RS17600	0.61	-1.3
3,307,585	-		LU632_RS17600	0.62	-1.4
3,307,595	+		LU632_RS17600	0.63	+0.9
3,307,599	+		LU632_RS17600	0.63	-0.4
3,307,599	+		LU632_RS17600	0.63	+0.4
3,307,768	+		LU632_RS17600	0.72	-0.4
3,307,768	+		LU632_RS17600	0.72	-0.3
3,307,768	+		LU632_RS17600	0.72	+0.3
3,307,768	+		LU632_RS17600	0.72	-2.5
3,307,769	-		LU632_RS17600	0.73	-1.0
3,307,769	-		LU632_RS17600	0.73	+0.9
3,307,785	+		LU632_RS17600	0.73	+1.5
3,307,821	-		LU632_RS17600	0.75	-0.5
3,307,878	-		LU632_RS17600	0.79	-1.1
3,307,889	+		LU632_RS17600	0.79	-0.1
3,307,979	-		LU632_RS17600	0.85	+0.8
3,308,162	+				-0.5
3,308,271	+				-0.1
3,308,271	+				-1.7
3,308,272	-				+1.4
3,308,295	+				-0.0
3,308,295	+				-0.6
3,308,296	-				-0.3
3,308,296	-				+0.0
3,308,296	-				+2.6
3,308,781	+				-1.5
3,308,783	+				+0.1
3,308,783	+				-0.0
3,308,783	+				+0.1
3,308,784	-				-0.4
3,308,912	-				+0.2
3,309,043	-	yejK	LU632_RS17610	0.16	-0.5
3,309,060	+	yejK	LU632_RS17610	0.17	+0.8
3,309,061	-	yejK	LU632_RS17610	0.17	-0.2
3,309,206	+	yejK	LU632_RS17610	0.32	-0.1
3,309,206	+	yejK	LU632_RS17610	0.32	+0.4
3,309,207	-	yejK	LU632_RS17610	0.32	+0.9
3,309,212	+	yejK	LU632_RS17610	0.32	+1.0
3,309,213	-	yejK	LU632_RS17610	0.32	+8.4
3,309,213	-	yejK	LU632_RS17610	0.32	+0.0