Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17175

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
3,230,988	-		LU632_RS17170	0.40	+1.2
3,231,060	+		LU632_RS17170	0.44	+0.2
3,231,060	+		LU632_RS17170	0.44	-0.5
3,231,061	-		LU632_RS17170	0.45	+0.1
3,231,061	-		LU632_RS17170	0.45	-3.4
3,231,061	-		LU632_RS17170	0.45	+0.5
3,231,061	-		LU632_RS17170	0.45	-0.1
3,231,061	-		LU632_RS17170	0.45	-0.6
3,231,062	+		LU632_RS17170	0.45	+1.1
3,231,062	+		LU632_RS17170	0.45	+0.7
3,231,062	+		LU632_RS17170	0.45	-0.3
3,231,062	+		LU632_RS17170	0.45	-1.6
3,231,062	+		LU632_RS17170	0.45	+2.4
3,231,062	+		LU632_RS17170	0.45	-0.5
3,231,062	+		LU632_RS17170	0.45	-0.6
3,231,063	-		LU632_RS17170	0.45	+0.5
3,231,063	-		LU632_RS17170	0.45	+0.4
3,231,063	-		LU632_RS17170	0.45	+1.0
3,231,114	-		LU632_RS17170	0.48	+0.1
3,231,555	-		LU632_RS17170	0.75	+1.1
3,231,652	-		LU632_RS17170	0.80	+0.0
3,231,652	-		LU632_RS17170	0.80	+0.2
3,231,795	-		LU632_RS17170	0.89	-1.6
3,231,798	+		LU632_RS17170	0.89	-1.3
3,231,798	+		LU632_RS17170	0.89	+2.4
3,231,799	-		LU632_RS17170	0.89	-1.1
3,231,936	+				+1.7
3,232,055	+		LU632_RS17175	0.33	+2.4
3,232,056	-		LU632_RS17175	0.34	-1.2
3,232,100	+		LU632_RS17175	0.50	+0.1
3,232,220	+				-0.1
3,232,220	+				+0.5
3,232,220	+				-0.2
3,232,221	-				-0.6
3,232,221	-				-0.2
3,232,222	+				+0.9
3,232,222	+				-1.0
3,232,223	-				+0.8
3,232,223	-				+1.2
3,232,223	-				-0.5
3,232,229	-				+0.0
3,232,229	-				+0.5
3,232,229	-				-1.2
3,232,229	-				+0.6
3,232,441	-		LU632_RS17180	0.10	-2.8
3,232,587	+		LU632_RS17180	0.18	+1.9
3,232,588	-		LU632_RS17180	0.18	+0.0
3,232,588	-		LU632_RS17180	0.18	+0.2
3,232,660	+		LU632_RS17180	0.21	-0.7
3,232,707	-		LU632_RS17180	0.24	-0.5
3,232,787	-		LU632_RS17180	0.28	-0.9
3,232,806	+		LU632_RS17180	0.29	-0.9
3,232,982	-		LU632_RS17180	0.38	-0.8
3,233,045	+		LU632_RS17180	0.41	+1.0
3,233,045	+		LU632_RS17180	0.41	-0.4
3,233,119	+		LU632_RS17180	0.45	+0.7