Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15900

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
3,005,648	+				-1.7
3,005,651	+				+0.3
3,005,651	+				-0.3
3,005,651	+				-0.6
3,005,879	+		LU632_RS15900	0.79	-1.6
3,006,077	-				-1.8
3,006,206	+				+0.8
3,006,207	-				+2.7
3,006,207	-				+0.7
3,006,207	-				+0.7
3,006,252	-				+0.4
3,006,252	-				+1.1
3,006,415	-	galT	LU632_RS15905	0.20	+0.4
3,006,558	-	galT	LU632_RS15905	0.33	+0.2
3,006,763	+	galT	LU632_RS15905	0.53	-1.0
3,006,764	-	galT	LU632_RS15905	0.53	-0.1
3,006,775	-	galT	LU632_RS15905	0.54	+0.4
3,006,931	+	galT	LU632_RS15905	0.69	-0.2