Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15690

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
2,969,568	+		LU632_RS15680	0.83	+1.2
2,969,568	+		LU632_RS15680	0.83	+0.2
2,969,582	+		LU632_RS15680	0.84	-0.4
2,969,586	+		LU632_RS15680	0.84	+0.4
2,969,587	-		LU632_RS15680	0.84	+0.5
2,969,661	+		LU632_RS15680	0.90	+0.9
2,969,688	+				-0.3
2,969,699	-				+0.9
2,969,705	+				-0.0
2,969,706	-				+0.5
2,969,706	-				+0.3
2,969,706	-				-1.5
2,969,709	+				+0.3
2,969,709	+				+0.1
2,969,710	-				-1.4
2,969,730	+				-1.3
2,969,731	+				-0.2
2,969,850	+				+0.5
2,969,851	-				+0.2
2,969,858	+				+0.2
2,969,940	-	luxS	LU632_RS15685	0.18	-0.6
2,970,102	+	luxS	LU632_RS15685	0.49	-1.8
2,970,103	-	luxS	LU632_RS15685	0.49	+0.4
2,970,134	-	luxS	LU632_RS15685	0.55	-1.4
2,970,134	-	luxS	LU632_RS15685	0.55	-0.2
2,970,176	-	luxS	LU632_RS15685	0.63	-2.7
2,970,268	+	luxS	LU632_RS15685	0.81	+1.2
2,970,364	+				-0.3
2,970,365	-				+0.8
2,970,365	-				+0.0
2,970,370	+				-1.3
2,970,432	+				+0.0
2,970,666	+				-0.2
2,971,321	+	gshA	LU632_RS15690	0.51	-0.2
2,971,522	-	gshA	LU632_RS15690	0.64	-2.5
2,971,715	-	gshA	LU632_RS15690	0.77	-2.2
2,972,122	-				-1.5
2,972,122	-				+0.7
2,972,122	-				-0.0
2,972,203	-		LU632_RS15695	0.10	-0.5
2,972,252	+		LU632_RS15695	0.22	-1.6
2,972,274	-		LU632_RS15695	0.27	-0.3
2,972,274	-		LU632_RS15695	0.27	-0.5
2,972,282	+		LU632_RS15695	0.29	-0.8
2,972,282	+		LU632_RS15695	0.29	+0.4
2,972,282	+		LU632_RS15695	0.29	+1.4
2,972,282	+		LU632_RS15695	0.29	+0.4
2,972,283	-		LU632_RS15695	0.29	+0.4
2,972,283	-		LU632_RS15695	0.29	+0.8
2,972,283	-		LU632_RS15695	0.29	-0.7
2,972,283	-		LU632_RS15695	0.29	+0.3
2,972,283	-		LU632_RS15695	0.29	+1.3
2,972,283	-		LU632_RS15695	0.29	-0.5
2,972,283	-		LU632_RS15695	0.29	-2.5
2,972,395	+		LU632_RS15695	0.57	+0.6
2,972,398	+		LU632_RS15695	0.57	+1.6
2,972,399	-		LU632_RS15695	0.58	-0.4
2,972,399	-		LU632_RS15695	0.58	-1.7
2,972,471	+		LU632_RS15695	0.75	-0.2
2,972,471	+		LU632_RS15695	0.75	-1.0
2,972,472	-		LU632_RS15695	0.75	-0.2
2,972,472	-		LU632_RS15695	0.75	-1.0
2,972,472	-		LU632_RS15695	0.75	-0.0
2,972,473	+		LU632_RS15695	0.76	-0.9
2,972,474	-		LU632_RS15695	0.76	+1.5
2,972,474	-		LU632_RS15695	0.76	+1.4
2,972,599	-				-0.2
2,972,620	+				-0.1
2,972,622	+				+0.6
2,972,645	-	yqaB	LU632_RS15700	0.13	-0.7
2,972,645	-	yqaB	LU632_RS15700	0.13	-0.7
2,972,737	+	yqaB	LU632_RS15700	0.30	+1.8
2,972,848	-	yqaB	LU632_RS15700	0.49	+0.4
2,972,985	+	yqaB	LU632_RS15700	0.73	+2.8
2,972,986	-	yqaB	LU632_RS15700	0.74	+0.4
2,973,000	+	yqaB	LU632_RS15700	0.76	-1.7
2,973,012	+	yqaB	LU632_RS15700	0.78	-0.8
2,973,042	+	yqaB	LU632_RS15700	0.83	-1.4