Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14665

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
2,788,889	+				-0.1
2,788,948	-		LU632_RS14660	0.16	-1.6
2,789,554	+		LU632_RS14660	0.87	+0.0
2,789,554	+		LU632_RS14660	0.87	+4.0
2,789,554	+		LU632_RS14660	0.87	-0.3
2,789,603	-				-0.3
2,789,607	-				+2.9
2,789,607	-				+1.5
2,789,607	-				+0.5
2,789,689	-				-1.3
2,789,689	-				-0.7
2,789,692	-				+1.6
2,789,692	-				-0.1
2,789,720	+				-0.4
2,789,929	+		LU632_RS14665	0.52	-1.0
2,789,929	+		LU632_RS14665	0.52	-0.7
2,789,929	+		LU632_RS14665	0.52	-0.5
2,790,030	-		LU632_RS14665	0.74	-0.1
2,790,222	+				+0.1
2,790,306	+		LU632_RS14670	0.27	+0.1
2,790,308	+		LU632_RS14670	0.27	+1.8
2,790,308	+		LU632_RS14670	0.27	-1.5
2,790,390	+		LU632_RS14670	0.54	-0.6
2,790,390	+		LU632_RS14670	0.54	-0.9
2,790,452	+		LU632_RS14670	0.73	-1.3
2,790,516	+				-0.0
2,790,545	+				-0.5
2,790,548	+				+0.7
2,790,584	+				-0.1
2,790,590	+				+0.4
2,790,590	+				-0.9
2,790,649	-				-0.6
2,790,685	-				+0.0
2,790,685	-				+0.1
2,790,685	-				-0.4
2,790,685	-				-1.1
2,791,006	-		LU632_RS14675	0.20	+0.2