Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14475

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
2,757,207	+		LU632_RS14465	0.31	+0.5
2,757,288	+		LU632_RS14465	0.39	+0.3
2,757,364	+		LU632_RS14465	0.47	+0.4
2,757,467	+		LU632_RS14465	0.57	-0.2
2,757,521	+		LU632_RS14465	0.63	-0.0
2,757,535	+		LU632_RS14465	0.64	+0.7
2,757,535	+		LU632_RS14465	0.64	+0.9
2,757,796	-				-0.5
2,757,834	-				-0.0
2,757,863	+				-0.3
2,757,970	-		LU632_RS14470	0.47	-1.9
2,758,053	+				+0.7
2,758,127	+				+0.2
2,758,335	-		LU632_RS14475	0.38	+0.5
2,758,339	-		LU632_RS14475	0.38	+2.3
2,758,339	-		LU632_RS14475	0.38	+2.3
2,758,339	-		LU632_RS14475	0.38	+0.1
2,758,339	-		LU632_RS14475	0.38	+0.3
2,758,377	-		LU632_RS14475	0.43	+0.1
2,758,382	-		LU632_RS14475	0.44	-0.3
2,758,411	+		LU632_RS14475	0.48	-0.1
2,758,453	+		LU632_RS14475	0.54	-1.3
2,758,453	+		LU632_RS14475	0.54	+0.5
2,758,453	+		LU632_RS14475	0.54	-0.6
2,758,454	-		LU632_RS14475	0.54	-1.3
2,758,492	+		LU632_RS14475	0.60	-1.5
2,758,643	-		LU632_RS14475	0.81	+0.4
2,758,643	-		LU632_RS14475	0.81	-1.2
2,758,643	-		LU632_RS14475	0.81	-0.6
2,758,661	+		LU632_RS14475	0.83	-0.4
2,758,661	+		LU632_RS14475	0.83	+0.6
2,758,766	+				+0.6
2,758,833	+				+0.2
2,759,040	+		LU632_RS14480	0.18	+1.3
2,759,040	+		LU632_RS14480	0.18	+0.8
2,759,040	+		LU632_RS14480	0.18	-0.6
2,759,051	+		LU632_RS14480	0.20	+0.9
2,759,051	+		LU632_RS14480	0.20	+1.3
2,759,051	+		LU632_RS14480	0.20	-0.8
2,759,051	+		LU632_RS14480	0.20	+0.3
2,759,121	+		LU632_RS14480	0.32	-0.7
2,759,121	+		LU632_RS14480	0.32	-0.5
2,759,153	+		LU632_RS14480	0.38	-0.3
2,759,153	+		LU632_RS14480	0.38	+1.3
2,759,199	+		LU632_RS14480	0.46	+0.9
2,759,199	+		LU632_RS14480	0.46	-1.3
2,759,199	+		LU632_RS14480	0.46	-0.2
2,759,658	+		LU632_RS14485	0.66	-0.0
2,759,686	+		LU632_RS14485	0.80	-0.2
2,759,728	+				-0.2