Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14015

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
2,690,421	+	ldcA	LU632_RS14010	0.40	+0.9
2,690,422	-	ldcA	LU632_RS14010	0.40	-1.3
2,690,422	-	ldcA	LU632_RS14010	0.40	-0.3
2,690,523	+	ldcA	LU632_RS14010	0.51	-2.1
2,690,564	+	ldcA	LU632_RS14010	0.56	+0.8
2,690,745	+	ldcA	LU632_RS14010	0.75	+0.8
2,690,746	-	ldcA	LU632_RS14010	0.75	-0.3
2,690,961	+				-0.0
2,690,962	-				-1.1
2,691,053	-				-2.2
2,691,115	+				+0.2
2,691,119	+				-1.3
2,691,182	+				-0.3
2,691,183	-				-0.1
2,691,186	+				+0.6
2,691,248	-				-0.2
2,691,292	+				+1.3
2,691,292	+				+0.8
2,691,293	-				-0.2
2,691,296	+				+0.8
2,691,308	+		LU632_RS14015	0.26	+0.4
2,691,308	+		LU632_RS14015	0.26	-0.4
2,691,309	-		LU632_RS14015	0.27	+0.1
2,691,309	-		LU632_RS14015	0.27	+1.4
2,691,370	-				-0.6