Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13730

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
2,621,532	-		LU632_RS13725	0.37	+0.2
2,621,539	+		LU632_RS13725	0.38	-1.8
2,621,695	-		LU632_RS13725	0.52	+0.6
2,621,704	+		LU632_RS13725	0.53	+1.1
2,621,704	+		LU632_RS13725	0.53	-0.4
2,621,705	-		LU632_RS13725	0.53	+0.1
2,621,705	-		LU632_RS13725	0.53	+0.6
2,621,705	-		LU632_RS13725	0.53	-0.6
2,621,725	+		LU632_RS13725	0.55	-0.2
2,621,725	+		LU632_RS13725	0.55	-0.9
2,621,726	-		LU632_RS13725	0.55	-0.0
2,621,827	+		LU632_RS13725	0.64	-0.8
2,621,856	+		LU632_RS13725	0.66	-0.8
2,621,856	+		LU632_RS13725	0.66	-0.8
2,621,857	-		LU632_RS13725	0.66	-0.7
2,622,125	+				+2.4
2,622,147	+				+0.3
2,622,234	-				+0.9
2,622,234	-				+0.4
2,622,240	+				+0.5
2,622,240	+				-0.1
2,622,339	+				+4.1
2,622,344	-				+0.4
2,622,344	-				+0.8
2,622,344	-				+0.4
2,622,447	+		LU632_RS13730	0.21	-1.1
2,622,448	-		LU632_RS13730	0.21	-0.6
2,622,543	-		LU632_RS13730	0.33	-0.8
2,622,603	+		LU632_RS13730	0.40	-0.2
2,622,615	+		LU632_RS13730	0.41	-1.7
2,622,830	+		LU632_RS13730	0.67	-2.2
2,622,939	-		LU632_RS13730	0.80	-0.7
2,623,233	+				+1.0
2,623,270	+				+3.0
2,623,290	+				-0.1
2,623,331	+				-1.1
2,623,331	+				-0.2
2,623,332	-				+0.2
2,623,556	+				-1.9
2,623,556	+				-0.2
2,623,557	-				+0.2
2,623,557	-				-1.5
2,623,646	+				-1.5
2,623,646	+				-0.8
2,623,647	-				+0.8
2,623,647	-				+0.2
2,623,647	-				-0.3
2,623,651	-				+0.3
2,623,674	+				+0.0
2,623,674	+				+0.5
2,623,675	+				-1.6
2,623,675	-				+0.4
2,623,676	+				+0.8
2,623,676	+				+0.1
2,623,676	+				-1.1
2,623,676	+				+0.0
2,623,676	+				-0.9
2,623,676	+				+0.9
2,623,677	-				-2.1
2,623,677	-				-0.4
2,623,677	-				+1.2
2,623,678	+				-1.0
2,623,678	+				-1.3
2,623,679	-				-0.6
2,623,679	-				-0.6
2,623,679	-				-0.3
2,623,679	-				+0.3
2,623,871	+				+1.8
2,624,003	+	putP	LU632_RS13735	0.19	-0.3
2,624,074	+	putP	LU632_RS13735	0.23	-0.6