Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13215

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
2,523,107	-	cspE	LU632_RS13210	0.59	+3.1
2,523,136	-	cspE	LU632_RS13210	0.73	+1.2
2,523,150	+	cspE	LU632_RS13210	0.80	+0.8
2,523,151	-	cspE	LU632_RS13210	0.80	-1.1
2,523,180	+				-0.0
2,523,231	+				+1.2
2,523,231	+				+1.3
2,523,236	-				+1.0
2,523,256	-				-0.4
2,523,502	-				-1.3
2,523,597	-				-0.3
2,524,004	+		LU632_RS13215	0.14	+0.8
2,524,005	-		LU632_RS13215	0.14	-0.2
2,524,024	+		LU632_RS13215	0.16	+0.4
2,524,025	-		LU632_RS13215	0.16	-0.1
2,524,111	-		LU632_RS13215	0.25	+0.5
2,524,111	-		LU632_RS13215	0.25	-0.3
2,524,276	+		LU632_RS13215	0.41	-0.8
2,524,303	-		LU632_RS13215	0.44	-0.1
2,524,327	+		LU632_RS13215	0.46	-0.8
2,524,328	-		LU632_RS13215	0.47	-0.7
2,524,328	-		LU632_RS13215	0.47	-1.8
2,524,404	+		LU632_RS13215	0.54	-0.9
2,524,549	-		LU632_RS13215	0.69	+3.5
2,524,589	+		LU632_RS13215	0.73	+0.7
2,524,778	+				+0.4
2,524,778	+				+0.5
2,524,778	+				+0.4
2,524,778	+				+0.5
2,524,779	-				+1.2
2,524,779	-				-0.6
2,524,779	-				+0.5
2,524,817	+				+0.2
2,524,818	-				+1.2
2,524,818	-				-1.1
2,524,865	-				+0.3
2,524,868	+				+0.5
2,524,868	+				-2.2
2,525,071	+		LU632_RS13220	0.75	+0.3
2,525,231	+				+1.1
2,525,256	+				+0.5
2,525,268	+				+0.2
2,525,269	-				+0.3
2,525,269	-				-0.3
2,525,291	+				-0.4
2,525,303	+				-1.3
2,525,304	-				-1.8
2,525,304	-				+0.1
2,525,338	-				-0.0
2,525,363	+				+1.1
2,525,371	+				+0.4
2,525,371	+				+1.2
2,525,372	-				+1.1
2,525,372	-				-1.8
2,525,372	-				+1.1
2,525,463	+		LU632_RS13225	0.38	+0.4
2,525,464	-		LU632_RS13225	0.38	-0.3
2,525,530	+		LU632_RS13225	0.66	+0.3
2,525,531	-		LU632_RS13225	0.66	-1.9
2,525,531	-		LU632_RS13225	0.66	-0.3
2,525,552	+		LU632_RS13225	0.75	-0.4
2,525,600	+				-0.3
2,525,601	-				+1.1
2,525,601	-				+1.5
2,525,604	+				+0.0
2,525,604	+				+0.1
2,525,605	-				+0.7
2,525,605	-				-1.6
2,525,609	-				+0.0
2,525,609	-				+0.5
2,525,713	-				-0.3