Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13190

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
2,516,497	+	sdaA	LU632_RS13185	0.46	-2.0
2,516,498	-	sdaA	LU632_RS13185	0.47	+0.1
2,516,498	-	sdaA	LU632_RS13185	0.47	-0.6
2,516,507	+	sdaA	LU632_RS13185	0.47	+0.2
2,516,519	+	sdaA	LU632_RS13185	0.48	-0.6
2,516,641	+	sdaA	LU632_RS13185	0.57	-0.7
2,516,641	+	sdaA	LU632_RS13185	0.57	-0.7
2,516,642	-	sdaA	LU632_RS13185	0.57	-0.3
2,516,761	-	sdaA	LU632_RS13185	0.66	-0.3
2,516,839	-	sdaA	LU632_RS13185	0.72	-1.2
2,516,890	+	sdaA	LU632_RS13185	0.75	+0.0
2,516,891	-	sdaA	LU632_RS13185	0.75	-0.8
2,516,891	-	sdaA	LU632_RS13185	0.75	-0.4
2,516,897	-	sdaA	LU632_RS13185	0.76	-1.2
2,516,897	-	sdaA	LU632_RS13185	0.76	-0.6
2,516,897	-	sdaA	LU632_RS13185	0.76	-1.9
2,516,897	-	sdaA	LU632_RS13185	0.76	-1.0
2,516,987	+	sdaA	LU632_RS13185	0.82	+0.1
2,516,987	+	sdaA	LU632_RS13185	0.82	+1.8
2,516,987	+	sdaA	LU632_RS13185	0.82	-1.3
2,516,988	-	sdaA	LU632_RS13185	0.82	+0.2
2,517,054	-	sdaA	LU632_RS13185	0.87	-0.8
2,517,128	+				+0.7
2,517,148	-				-0.1
2,517,209	+				-0.8
2,517,209	+				+1.8
2,517,261	+				+2.2
2,517,261	+				-0.8
2,517,334	-				-0.5
2,517,366	-				-0.9
2,517,391	+				+0.0
2,517,391	+				-0.8
2,517,397	+				+1.5
2,517,404	-				+1.6
2,517,444	+				+0.4
2,517,444	+				+0.6
2,517,444	+				-0.6
2,517,531	-				-0.6
2,517,730	-		LU632_RS13190	0.17	-1.4
2,517,793	+		LU632_RS13190	0.21	-1.4
2,517,794	-		LU632_RS13190	0.21	+2.8
2,517,806	+		LU632_RS13190	0.21	-0.3
2,517,806	+		LU632_RS13190	0.21	-0.0
2,517,806	+		LU632_RS13190	0.21	-1.1
2,517,806	+		LU632_RS13190	0.21	-1.0
2,517,807	-		LU632_RS13190	0.21	-0.9
2,517,807	-		LU632_RS13190	0.21	-1.6
2,517,894	+		LU632_RS13190	0.27	-0.6
2,517,894	+		LU632_RS13190	0.27	+4.8
2,517,957	+		LU632_RS13190	0.31	+0.2
2,517,994	+		LU632_RS13190	0.33	+0.8
2,517,994	+		LU632_RS13190	0.33	+1.8
2,517,995	-		LU632_RS13190	0.33	-0.5
2,518,114	+		LU632_RS13190	0.41	-0.8
2,518,154	+		LU632_RS13190	0.44	-0.5
2,518,232	+		LU632_RS13190	0.49	+1.6
2,518,241	-		LU632_RS13190	0.49	+0.0
2,518,242	+		LU632_RS13190	0.49	-1.6
2,518,242	+		LU632_RS13190	0.49	+0.1
2,518,243	-		LU632_RS13190	0.49	-1.3
2,518,243	-		LU632_RS13190	0.49	+0.7
2,518,291	-		LU632_RS13190	0.52	-2.3
2,518,325	-		LU632_RS13190	0.55	+0.2
2,518,342	-		LU632_RS13190	0.56	-0.9
2,518,376	+		LU632_RS13190	0.58	-0.3
2,518,424	+		LU632_RS13190	0.61	-1.8
2,518,424	+		LU632_RS13190	0.61	+0.5
2,518,425	-		LU632_RS13190	0.61	+0.3
2,518,428	+		LU632_RS13190	0.61	-0.3
2,518,429	-		LU632_RS13190	0.61	+0.2
2,518,429	-		LU632_RS13190	0.61	-1.6
2,518,579	-		LU632_RS13190	0.71	-0.4
2,518,598	+		LU632_RS13190	0.72	-1.1
2,518,740	+		LU632_RS13190	0.81	-0.0
2,518,740	+		LU632_RS13190	0.81	+2.6
2,518,825	-		LU632_RS13190	0.87	-0.5
2,518,825	-		LU632_RS13190	0.87	+1.0
2,518,828	-		LU632_RS13190	0.87	+0.5
2,518,846	-		LU632_RS13190	0.88	-2.0
2,518,846	-		LU632_RS13190	0.88	-0.6
2,518,851	+		LU632_RS13190	0.88	-0.6
2,518,851	+		LU632_RS13190	0.88	-0.1
2,518,852	-		LU632_RS13190	0.88	+1.7
2,518,921	+				+0.9
2,518,964	-				-0.2
2,518,974	+				+0.1
2,518,974	+				+0.1
2,519,036	+				+0.8
2,519,037	-				-1.5
2,519,060	-				+1.6
2,519,060	-				+0.9
2,519,062	+				+2.9
2,519,062	+				-0.6
2,519,111	+				+0.1
2,519,112	-				-0.8
2,519,113	+				-0.6
2,519,114	-				+1.1
2,519,220	-				+1.3
2,519,224	+				-0.1
2,519,224	+				-0.2
2,519,230	+				-0.6
2,519,232	+				-0.4
2,519,344	-				+0.7
2,519,358	+				+2.8
2,519,359	-				-2.3
2,519,359	-				+1.0
2,519,359	-				+0.2
2,519,604	-		LU632_RS13195	0.22	+0.6
2,519,607	-		LU632_RS13195	0.22	-0.6
2,519,607	-		LU632_RS13195	0.22	-1.5
2,519,773	-		LU632_RS13195	0.32	+0.3
2,519,798	+		LU632_RS13195	0.34	+1.1
2,519,846	+		LU632_RS13195	0.37	+0.2
2,519,850	+		LU632_RS13195	0.37	-0.7
2,519,862	-		LU632_RS13195	0.38	-1.2
2,519,964	+		LU632_RS13195	0.45	+0.1
2,519,971	+		LU632_RS13195	0.45	-0.3
2,519,971	+		LU632_RS13195	0.45	+0.1
2,519,972	-		LU632_RS13195	0.45	-0.1