Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13125

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
2,503,838	-	minC	LU632_RS13115	0.81	-0.7
2,503,856	+	minC	LU632_RS13115	0.83	-0.9
2,503,863	+	minC	LU632_RS13115	0.84	+0.2
2,503,876	+	minC	LU632_RS13115	0.86	+0.3
2,503,955	+				+3.8
2,504,010	+				-2.1
2,504,011	-				-0.6
2,504,027	+				+0.4
2,504,143	-	minD	LU632_RS13120	0.16	-1.9
2,504,153	+	minD	LU632_RS13120	0.17	-0.6
2,504,154	-	minD	LU632_RS13120	0.18	+0.3
2,504,231	+	minD	LU632_RS13120	0.27	-0.9
2,504,359	-	minD	LU632_RS13120	0.43	-0.8
2,504,430	+	minD	LU632_RS13120	0.52	-1.9
2,504,430	+	minD	LU632_RS13120	0.52	+0.1
2,504,430	+	minD	LU632_RS13120	0.52	+1.6
2,504,431	-	minD	LU632_RS13120	0.52	+0.6
2,504,557	+	minD	LU632_RS13120	0.67	+1.2
2,504,558	-	minD	LU632_RS13120	0.67	-0.3
2,504,587	-	minD	LU632_RS13120	0.71	-0.5
2,504,592	-	minD	LU632_RS13120	0.71	-2.7
2,504,592	-	minD	LU632_RS13120	0.71	-1.7
2,504,606	+	minD	LU632_RS13120	0.73	-0.1
2,504,607	-	minD	LU632_RS13120	0.73	+0.2
2,504,618	+	minD	LU632_RS13120	0.75	-0.8
2,504,718	+	minD	LU632_RS13120	0.87	+0.4
2,504,719	-	minD	LU632_RS13120	0.87	+1.2
2,504,979	+	minE	LU632_RS13125	0.56	+0.2
2,504,984	-	minE	LU632_RS13125	0.58	-0.8
2,505,111	+				+0.2
2,505,128	+				-0.0
2,505,129	-				+0.2
2,505,357	+	rnd	LU632_RS13130	0.19	-0.6
2,505,359	+	rnd	LU632_RS13130	0.19	+1.2
2,505,359	+	rnd	LU632_RS13130	0.19	+0.1
2,505,516	+	rnd	LU632_RS13130	0.33	+0.1
2,505,570	+	rnd	LU632_RS13130	0.38	-0.6
2,505,571	-	rnd	LU632_RS13130	0.38	-0.6
2,505,617	-	rnd	LU632_RS13130	0.42	+0.1
2,505,641	-	rnd	LU632_RS13130	0.44	-0.8
2,505,641	-	rnd	LU632_RS13130	0.44	+0.6
2,505,657	+	rnd	LU632_RS13130	0.45	+1.4
2,506,044	+	rnd	LU632_RS13130	0.80	-1.8
2,506,044	+	rnd	LU632_RS13130	0.80	+1.2
2,506,044	+	rnd	LU632_RS13130	0.80	+1.6
2,506,048	-	rnd	LU632_RS13130	0.80	+0.9