Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12965

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
2,471,300	+		LU632_RS12960	0.66	-0.5
2,471,408	+		LU632_RS12960	0.72	-0.5
2,471,409	-		LU632_RS12960	0.72	-0.4
2,471,424	-		LU632_RS12960	0.73	-1.3
2,471,551	-		LU632_RS12960	0.79	-0.9
2,471,597	-		LU632_RS12960	0.82	-0.4
2,471,614	-		LU632_RS12960	0.82	+1.6
2,471,614	-		LU632_RS12960	0.82	-0.4
2,471,619	+		LU632_RS12960	0.83	+2.0
2,471,620	-		LU632_RS12960	0.83	+0.6
2,471,620	-		LU632_RS12960	0.83	-0.3
2,471,688	+		LU632_RS12960	0.86	+0.4
2,471,786	+				-1.6
2,471,788	+				-0.8
2,471,789	-				-2.1
2,471,789	-				+0.9
2,471,840	+				-0.2
2,471,840	+				-0.5
2,471,841	-				+1.5
2,471,841	-				-0.1
2,471,850	-				+0.5
2,471,985	+				-1.5
2,472,057	-				+0.2
2,472,111	+				+0.4
2,472,123	+				+1.9
2,472,124	-				+0.1
2,472,125	+				+1.9
2,472,135	+				-0.1
2,472,139	-				-0.0
2,472,226	+				-0.6
2,472,226	+				-0.8
2,472,226	+				+1.0
2,472,295	+		LU632_RS12965	0.14	-1.4
2,472,346	-		LU632_RS12965	0.23	-1.4
2,472,425	+		LU632_RS12965	0.37	+2.4
2,472,425	+		LU632_RS12965	0.37	+0.4
2,472,446	+		LU632_RS12965	0.41	+2.2
2,472,586	-		LU632_RS12965	0.66	+1.5
2,472,630	-		LU632_RS12965	0.74	-0.0
2,472,630	-		LU632_RS12965	0.74	-0.5
2,472,645	+		LU632_RS12965	0.77	+0.2
2,472,671	+		LU632_RS12965	0.82	+1.8
2,472,671	+		LU632_RS12965	0.82	-2.2
2,472,770	+				-0.5
2,472,770	+				+0.6
2,472,771	-				-0.7
2,472,771	-				-1.2
2,472,927	+				+0.1
2,472,927	+				+0.8
2,472,927	+				-0.3
2,472,928	-				-0.2
2,472,928	-				+0.4
2,472,939	-				+0.0
2,472,950	-				-1.1
2,473,045	-				+1.5
2,473,082	+				-0.6
2,473,083	-				-1.6
2,473,156	+	sppA	LU632_RS12970	0.11	+2.1
2,473,157	-	sppA	LU632_RS12970	0.11	+0.5
2,473,286	-	sppA	LU632_RS12970	0.18	-0.5
2,473,346	+	sppA	LU632_RS12970	0.21	-1.1
2,473,347	-	sppA	LU632_RS12970	0.21	-1.2
2,473,347	-	sppA	LU632_RS12970	0.21	+0.2
2,473,363	-	sppA	LU632_RS12970	0.22	+0.8
2,473,408	+	sppA	LU632_RS12970	0.25	-0.3
2,473,409	-	sppA	LU632_RS12970	0.25	+0.6
2,473,413	-	sppA	LU632_RS12970	0.25	-0.4
2,473,413	-	sppA	LU632_RS12970	0.25	+1.2
2,473,428	-	sppA	LU632_RS12970	0.26	-0.1
2,473,428	-	sppA	LU632_RS12970	0.26	-2.4
2,473,428	-	sppA	LU632_RS12970	0.26	-0.7
2,473,428	-	sppA	LU632_RS12970	0.26	+1.2
2,473,430	+	sppA	LU632_RS12970	0.26	+0.2
2,473,430	+	sppA	LU632_RS12970	0.26	-0.9
2,473,431	-	sppA	LU632_RS12970	0.26	-1.6
2,473,554	+	sppA	LU632_RS12970	0.33	-0.6
2,473,571	+	sppA	LU632_RS12970	0.33	-1.5
2,473,573	+	sppA	LU632_RS12970	0.34	-1.0
2,473,606	+	sppA	LU632_RS12970	0.35	-1.5
2,473,606	+	sppA	LU632_RS12970	0.35	-0.0
2,473,606	+	sppA	LU632_RS12970	0.35	-1.2
2,473,606	+	sppA	LU632_RS12970	0.35	-0.4
2,473,607	-	sppA	LU632_RS12970	0.35	-0.2
2,473,607	-	sppA	LU632_RS12970	0.35	-2.2
2,473,607	-	sppA	LU632_RS12970	0.35	+0.2
2,473,664	+	sppA	LU632_RS12970	0.38	+0.9
2,473,672	+	sppA	LU632_RS12970	0.39	-0.4
2,473,731	+	sppA	LU632_RS12970	0.42	+2.0