Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12425

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
2,358,730	-		LU632_RS12410	0.58	+0.2
2,358,760	+		LU632_RS12410	0.73	-0.4
2,358,760	+		LU632_RS12410	0.73	+0.2
2,358,797	+				-0.0
2,358,797	+				-0.8
2,358,798	-				-0.4
2,358,798	-				-0.4
2,358,798	-				+0.4
2,358,798	-				+0.1
2,358,802	+				-0.8
2,358,803	-				+1.3
2,358,956	-		LU632_RS12415	0.23	-1.8
2,359,004	+		LU632_RS12415	0.30	-1.1
2,359,005	-		LU632_RS12415	0.30	-1.8
2,359,005	-		LU632_RS12415	0.30	-0.3
2,359,005	-		LU632_RS12415	0.30	-0.5
2,359,115	-		LU632_RS12415	0.47	+1.5
2,359,134	+		LU632_RS12415	0.50	-0.3
2,359,138	+		LU632_RS12415	0.51	-0.6
2,359,160	+		LU632_RS12415	0.54	-1.2
2,359,160	+		LU632_RS12415	0.54	-0.8
2,359,160	+		LU632_RS12415	0.54	-1.1
2,359,160	+		LU632_RS12415	0.54	-0.3
2,359,160	+		LU632_RS12415	0.54	-3.1
2,359,160	+		LU632_RS12415	0.54	-0.2
2,359,160	+		LU632_RS12415	0.54	-0.5
2,359,160	+		LU632_RS12415	0.54	-0.8
2,359,233	-		LU632_RS12415	0.65	-0.1
2,359,239	-		LU632_RS12415	0.66	-0.2
2,359,262	+		LU632_RS12415	0.70	-0.4
2,359,282	+		LU632_RS12415	0.73	-0.9
2,359,302	-		LU632_RS12415	0.76	+0.6
2,359,316	-		LU632_RS12415	0.78	+0.5
2,359,320	-		LU632_RS12415	0.78	-1.1
2,359,370	+		LU632_RS12415	0.86	-1.8
2,359,435	-				+3.4
2,359,460	+				+0.7
2,359,460	+				+0.6
2,359,460	+				-0.4
2,359,639	+		LU632_RS12420	0.73	+0.8
2,359,673	+		LU632_RS12420	0.86	-1.2
2,359,673	+		LU632_RS12420	0.86	-0.4
2,359,673	+		LU632_RS12420	0.86	+0.3
2,359,693	+				+0.2
2,359,693	+				+0.6
2,359,694	-				+0.3
2,359,694	-				+1.8
2,359,782	+		LU632_RS12425	0.40	+0.2
2,359,813	+		LU632_RS12425	0.56	-1.5
2,359,814	-		LU632_RS12425	0.57	-0.1
2,359,814	-		LU632_RS12425	0.57	-0.5
2,359,881	-				+1.2
2,359,896	-				-0.4
2,359,896	-				-0.2
2,359,896	-				+0.0
2,359,968	+				-1.2
2,360,039	-		LU632_RS12430	0.15	+1.9
2,360,246	+		LU632_RS12430	0.61	-0.0
2,360,406	+				-1.1
2,360,453	-				+0.4
2,360,457	-				+0.7
2,360,457	-				+0.3
2,360,549	+		LU632_RS12435	0.11	+2.1
2,360,627	+		LU632_RS12435	0.20	-1.3
2,360,655	+		LU632_RS12435	0.24	+0.0
2,360,872	-		LU632_RS12435	0.49	+1.2
2,360,872	-		LU632_RS12435	0.49	+0.2
2,360,872	-		LU632_RS12435	0.49	+0.3
2,360,872	-		LU632_RS12435	0.49	+0.2
2,360,874	-		LU632_RS12435	0.50	+0.1