Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12390

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
2,354,564	+				-0.1
2,354,577	+				-0.4
2,354,577	+				-0.4
2,354,581	+				-0.9
2,354,640	-				+0.3
2,354,709	-		LU632_RS12385	0.10	-0.4
2,354,777	-		LU632_RS12385	0.27	+0.2
2,354,777	-		LU632_RS12385	0.27	+1.2
2,354,806	+		LU632_RS12385	0.34	+0.4
2,354,808	+		LU632_RS12385	0.34	-2.0
2,354,883	-		LU632_RS12385	0.52	+1.2
2,355,099	+				-0.1
2,355,293	-				+0.2
2,355,314	+				+0.6
2,355,314	+				-1.6
2,355,315	-				-2.4
2,355,315	-				-1.2
2,355,337	-				-0.4
2,355,383	-				+0.3
2,355,404	+				+0.5
2,355,404	+				-0.1
2,355,405	-				-1.4
2,355,405	-				+2.9
2,355,444	+				-0.5
2,355,495	+				-1.1
2,355,499	+				-1.6