Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12370

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
2,351,217	+				-0.8
2,351,238	+				+0.3
2,351,239	-				+1.9
2,351,241	+				+0.4
2,351,241	+				-0.8
2,351,359	-		LU632_RS12365	0.16	-0.6
2,351,361	+		LU632_RS12365	0.16	-0.1
2,351,401	+		LU632_RS12365	0.21	-0.2
2,351,404	+		LU632_RS12365	0.22	-0.1
2,351,404	+		LU632_RS12365	0.22	-0.5
2,351,435	+		LU632_RS12365	0.26	+0.7
2,351,435	-		LU632_RS12365	0.26	-1.2
2,351,464	+		LU632_RS12365	0.29	+0.9
2,351,464	+		LU632_RS12365	0.29	+0.8
2,351,465	-		LU632_RS12365	0.29	+0.1
2,351,470	+		LU632_RS12365	0.30	-1.4
2,351,496	+		LU632_RS12365	0.33	-0.3
2,351,497	-		LU632_RS12365	0.34	-0.4
2,351,497	-		LU632_RS12365	0.34	-0.1
2,351,569	+		LU632_RS12365	0.43	-2.5
2,351,569	+		LU632_RS12365	0.43	-0.8
2,351,606	-		LU632_RS12365	0.48	+0.6
2,351,651	-		LU632_RS12365	0.53	-1.1
2,351,651	-		LU632_RS12365	0.53	-2.0
2,351,654	-		LU632_RS12365	0.54	+0.1
2,351,661	+		LU632_RS12365	0.55	+0.3
2,351,687	+		LU632_RS12365	0.58	+0.5
2,351,688	-		LU632_RS12365	0.58	-2.7
2,351,688	-		LU632_RS12365	0.58	+0.0
2,351,688	-		LU632_RS12365	0.58	-2.0
2,351,689	+		LU632_RS12365	0.58	+0.6
2,351,689	+		LU632_RS12365	0.58	-0.5
2,351,690	-		LU632_RS12365	0.59	+0.7
2,351,690	-		LU632_RS12365	0.59	-0.2
2,351,691	+		LU632_RS12365	0.59	-0.2
2,351,691	+		LU632_RS12365	0.59	-0.2
2,351,691	+		LU632_RS12365	0.59	-0.4
2,351,691	+		LU632_RS12365	0.59	+0.1
2,351,692	-		LU632_RS12365	0.59	-1.4
2,351,692	-		LU632_RS12365	0.59	+0.1
2,351,692	-		LU632_RS12365	0.59	-0.1
2,351,704	+		LU632_RS12365	0.60	+0.2
2,351,705	-		LU632_RS12365	0.60	+0.6
2,351,705	-		LU632_RS12365	0.60	-0.4
2,351,705	-		LU632_RS12365	0.60	+0.1
2,351,836	+		LU632_RS12365	0.77	+1.1
2,351,837	-		LU632_RS12365	0.78	-0.3
2,351,841	+		LU632_RS12365	0.78	-0.3
2,351,991	+				+0.2
2,352,314	-		LU632_RS12370	0.26	+2.5
2,352,369	+		LU632_RS12370	0.40	+1.2
2,352,369	+		LU632_RS12370	0.40	-0.8
2,352,429	+		LU632_RS12370	0.54	-2.0
2,352,508	-		LU632_RS12370	0.74	+0.1
2,352,508	-		LU632_RS12370	0.74	+2.0
2,352,535	-		LU632_RS12370	0.80	-0.2
2,352,680	-				+0.1
2,353,114	+				-0.1
2,353,115	-				-0.1
2,353,178	-				+0.2
2,353,248	+				+0.0
2,353,248	+				-0.7
2,353,248	+				+1.2
2,353,249	-				-1.2
2,353,252	+				+1.0
2,353,252	+				-1.8
2,353,252	+				-0.2
2,353,253	-				+0.8
2,353,308	-				-0.8
2,353,354	+				+0.8
2,353,354	+				+0.8
2,353,450	+		LU632_RS12380	0.18	+0.2
2,353,476	+		LU632_RS12380	0.20	-0.5
2,353,476	+		LU632_RS12380	0.20	-0.8
2,353,476	+		LU632_RS12380	0.20	+1.0
2,353,514	-		LU632_RS12380	0.24	-1.1
2,353,544	+		LU632_RS12380	0.28	+0.3
2,353,544	+		LU632_RS12380	0.28	-0.2
2,353,594	+		LU632_RS12380	0.33	-0.5
2,353,594	+		LU632_RS12380	0.33	-0.6
2,353,595	-		LU632_RS12380	0.33	-0.4
2,353,595	-		LU632_RS12380	0.33	-0.4