Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11945

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
2,260,012	+		LU632_RS11940	0.82	+0.5
2,260,067	+		LU632_RS11940	0.86	-1.7
2,260,067	+		LU632_RS11940	0.86	-0.9
2,260,104	+		LU632_RS11940	0.89	-2.0
2,260,105	-		LU632_RS11940	0.89	+0.1
2,260,105	-		LU632_RS11940	0.89	-0.2
2,260,167	+				-0.5
2,260,167	+				-1.1
2,260,167	+				-0.0
2,260,298	+				-0.4
2,260,302	+				-0.6
2,260,303	-				-0.6
2,260,303	-				-0.2
2,260,421	+				-0.2
2,260,421	+				+0.2
2,260,421	+				-1.4
2,260,622	+				+1.4
2,260,626	+				-0.2
2,260,654	+				+0.9
2,260,654	+				-0.1
2,260,655	-				+1.3
2,260,658	+				+1.4
2,260,658	+				-1.0
2,260,658	+				+0.7
2,260,870	+				+1.7
2,260,871	-				+0.0
2,260,890	+				-1.0
2,260,891	-				-2.0
2,260,891	-				-0.8
2,260,921	+				+1.1
2,260,938	+				+1.8
2,260,939	-				-1.4
2,260,939	-				-1.8
2,260,944	-				-1.8
2,261,112	+				-0.5
2,261,112	+				-1.1
2,261,113	-				+0.4
2,261,140	+		LU632_RS11945	0.11	+2.0
2,261,140	+		LU632_RS11945	0.11	-1.6
2,261,369	+		LU632_RS11945	0.28	-0.3
2,261,659	-		LU632_RS11945	0.49	-0.9
2,261,686	-		LU632_RS11945	0.50	+0.2
2,261,718	+		LU632_RS11945	0.53	-0.4
2,261,719	-		LU632_RS11945	0.53	+1.3
2,261,719	-		LU632_RS11945	0.53	+0.2
2,261,719	-		LU632_RS11945	0.53	-1.2
2,261,719	-		LU632_RS11945	0.53	+0.5
2,261,723	-		LU632_RS11945	0.53	-2.1
2,261,750	+		LU632_RS11945	0.55	-1.1
2,261,821	+		LU632_RS11945	0.60	+0.9
2,261,854	-		LU632_RS11945	0.63	+0.3
2,262,368	-				-0.8
2,262,397	-				-1.4
2,262,553	+				+1.4
2,262,607	-				-1.2
2,263,041	+		LU632_RS11950	0.22	+1.0
2,263,041	+		LU632_RS11950	0.22	+1.6
2,263,041	-		LU632_RS11950	0.22	+0.6
2,263,159	-		LU632_RS11950	0.26	+0.2
2,263,204	+		LU632_RS11950	0.28	+0.2
2,263,204	+		LU632_RS11950	0.28	+0.2
2,263,205	-		LU632_RS11950	0.28	+0.8
2,263,205	-		LU632_RS11950	0.28	-0.5
2,263,217	+		LU632_RS11950	0.28	-0.4
2,263,218	-		LU632_RS11950	0.28	-1.2