Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11900

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
2,250,726	-		LU632_RS11885	0.85	+1.2
2,250,756	-				-0.8
2,250,790	-		LU632_RS11890	0.13	-1.5
2,250,831	+		LU632_RS11890	0.34	-1.6
2,250,833	+		LU632_RS11890	0.35	+1.5
2,250,833	+		LU632_RS11890	0.35	-1.1
2,250,834	-		LU632_RS11890	0.35	+0.6
2,250,834	-		LU632_RS11890	0.35	-1.3
2,250,907	-		LU632_RS11890	0.72	-0.6
2,250,910	-		LU632_RS11890	0.73	+0.5
2,250,927	+		LU632_RS11890	0.82	-1.0
2,250,930	+		LU632_RS11890	0.83	-2.3
2,250,930	+		LU632_RS11890	0.83	-0.8
2,250,931	-		LU632_RS11890	0.84	+0.6
2,250,948	+				-0.0
2,251,004	+		LU632_RS11895	0.19	+1.8
2,251,103	+		LU632_RS11895	0.50	-0.4
2,251,142	-		LU632_RS11895	0.62	-0.2
2,251,166	-		LU632_RS11895	0.69	-0.5
2,251,166	-		LU632_RS11895	0.69	+0.4
2,251,209	-		LU632_RS11895	0.82	-0.1
2,251,219	+		LU632_RS11895	0.85	-0.4
2,251,285	+				+2.4
2,251,355	-				+0.8
2,251,381	+				+0.1
2,252,107	-				-2.4
2,252,361	-				-0.6
2,252,394	+				-1.0
2,252,394	+				-0.6
2,253,077	+		LU632_RS11905	0.22	+0.1