Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11785

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
2,239,771	-		LU632_RS11785	0.23	-0.7
2,239,771	-		LU632_RS11785	0.23	+1.2
2,239,772	+		LU632_RS11785	0.24	+0.4
2,239,773	-		LU632_RS11785	0.24	-1.4
2,239,776	+		LU632_RS11785	0.25	-0.9
2,239,777	-		LU632_RS11785	0.25	+0.1
2,239,777	-		LU632_RS11785	0.25	+0.3
2,239,790	+		LU632_RS11785	0.30	-0.7
2,239,838	+		LU632_RS11785	0.47	+2.3
2,239,974	-				+0.5
2,239,983	+				+0.7
2,239,984	-				-2.3
2,239,991	-				+1.2
2,240,001	+				+0.3
2,240,006	-				-0.4
2,240,006	-				-0.6
2,240,010	-				-0.6
2,240,033	+				+2.4
2,240,046	-		LU632_RS11790	0.11	-1.5
2,240,274	+		LU632_RS11790	0.50	-1.8
2,240,511	+				+1.3
2,240,512	-				-0.0
2,240,532	+				-0.6
2,240,660	+				-1.1
2,240,661	-				+2.2
2,240,696	+				-1.4
2,240,856	+		LU632_RS11795	0.21	-0.2
2,240,871	+		LU632_RS11795	0.22	+1.1
2,240,872	-		LU632_RS11795	0.22	+1.2
2,240,895	-		LU632_RS11795	0.24	+1.2
2,240,977	+		LU632_RS11795	0.29	+0.4
2,240,978	-		LU632_RS11795	0.29	+0.6