Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11700

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
2,224,471	-				+1.3
2,224,572	-				+0.5
2,224,692	+	rhaR	LU632_RS11695	0.21	-0.1
2,224,713	+	rhaR	LU632_RS11695	0.23	-1.5
2,224,734	+	rhaR	LU632_RS11695	0.26	-0.2
2,224,734	+	rhaR	LU632_RS11695	0.26	-0.5
2,224,734	+	rhaR	LU632_RS11695	0.26	-0.7
2,224,735	-	rhaR	LU632_RS11695	0.26	+0.2
2,224,735	-	rhaR	LU632_RS11695	0.26	-0.7
2,224,735	-	rhaR	LU632_RS11695	0.26	-0.7
2,224,739	-	rhaR	LU632_RS11695	0.26	+2.2
2,224,777	+	rhaR	LU632_RS11695	0.31	+0.3
2,224,777	+	rhaR	LU632_RS11695	0.31	+1.5
2,224,777	+	rhaR	LU632_RS11695	0.31	-1.8
2,224,778	-	rhaR	LU632_RS11695	0.31	-0.1
2,224,874	+	rhaR	LU632_RS11695	0.42	-1.0
2,224,875	-	rhaR	LU632_RS11695	0.42	+0.0
2,224,875	-	rhaR	LU632_RS11695	0.42	+0.3
2,224,884	+	rhaR	LU632_RS11695	0.43	-0.8
2,224,884	+	rhaR	LU632_RS11695	0.43	+0.9
2,224,911	+	rhaR	LU632_RS11695	0.46	+0.2
2,224,911	+	rhaR	LU632_RS11695	0.46	+0.7
2,224,911	+	rhaR	LU632_RS11695	0.46	-0.5
2,225,040	+	rhaR	LU632_RS11695	0.61	-0.4
2,225,040	+	rhaR	LU632_RS11695	0.61	-0.4
2,225,041	-	rhaR	LU632_RS11695	0.62	+1.5
2,225,168	-	rhaR	LU632_RS11695	0.76	+0.4
2,225,228	+	rhaR	LU632_RS11695	0.83	-1.4
2,225,373	+				+2.6
2,225,373	+				+1.2
2,225,446	+		LU632_RS11700	0.22	+0.3
2,225,446	+		LU632_RS11700	0.22	+0.5
2,225,446	+		LU632_RS11700	0.22	-0.3
2,225,447	-		LU632_RS11700	0.22	+0.3
2,225,512	-		LU632_RS11700	0.48	+0.8
2,225,512	-		LU632_RS11700	0.48	+0.2
2,225,513	-		LU632_RS11700	0.49	+0.0
2,225,624	-				+0.6
2,225,640	+				-3.8
2,225,683	+				-0.4
2,225,702	+				-0.1
2,225,702	+				+1.1
2,225,703	-				+0.4
2,226,028	+				+0.2
2,226,029	-				+0.2
2,226,201	+		LU632_RS11705	0.19	+2.8
2,226,346	-		LU632_RS11705	0.28	+0.8
2,226,346	-		LU632_RS11705	0.28	+1.1
2,226,622	-		LU632_RS11705	0.44	+1.4