Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11435

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
2,181,114	+	pntB	LU632_RS11430	0.42	-0.2
2,181,142	-	pntB	LU632_RS11430	0.44	-0.8
2,181,142	-	pntB	LU632_RS11430	0.44	-0.8
2,181,142	-	pntB	LU632_RS11430	0.44	+2.5
2,181,143	-	pntB	LU632_RS11430	0.44	-0.8
2,181,147	-	pntB	LU632_RS11430	0.45	+0.1
2,181,147	-	pntB	LU632_RS11430	0.45	-0.4
2,181,147	-	pntB	LU632_RS11430	0.45	-0.9
2,181,147	-	pntB	LU632_RS11430	0.45	-2.2
2,181,253	-	pntB	LU632_RS11430	0.52	-0.8
2,181,328	-	pntB	LU632_RS11430	0.58	-0.6
2,181,387	+	pntB	LU632_RS11430	0.62	+0.2
2,181,388	-	pntB	LU632_RS11430	0.62	+0.8
2,181,427	-	pntB	LU632_RS11430	0.65	-1.4
2,181,600	-	pntB	LU632_RS11430	0.77	+1.7
2,181,887	+				-0.3
2,181,887	+				-1.4
2,181,887	+				-0.4
2,181,887	+				-1.5
2,181,887	+				-0.2
2,181,888	-				-0.0
2,181,898	+				-0.8
2,181,902	-				-0.1
2,182,140	+	pntA	LU632_RS11435	0.14	+0.2
2,182,141	-	pntA	LU632_RS11435	0.14	-0.6
2,182,141	-	pntA	LU632_RS11435	0.14	-1.1
2,182,151	+	pntA	LU632_RS11435	0.15	-0.4
2,182,169	+	pntA	LU632_RS11435	0.16	-2.1
2,182,442	-	pntA	LU632_RS11435	0.34	-0.2
2,182,515	-	pntA	LU632_RS11435	0.38	-3.0
2,182,713	-	pntA	LU632_RS11435	0.51	-0.8
2,183,099	-	pntA	LU632_RS11435	0.77	+0.6
2,183,157	-	pntA	LU632_RS11435	0.80	+0.8
2,183,189	-	pntA	LU632_RS11435	0.82	-0.8
2,183,189	-	pntA	LU632_RS11435	0.82	-0.3
2,183,254	+	pntA	LU632_RS11435	0.87	-0.2
2,183,271	-	pntA	LU632_RS11435	0.88	-0.4
2,183,311	-				+1.6
2,183,454	-				-0.6
2,183,458	+				-0.3
2,183,627	-				-0.4
2,183,695	+				-0.5