Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11410

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
2,175,035	-		LU632_RS11400	0.45	+0.4
2,175,206	-		LU632_RS11400	0.71	+1.1
2,175,230	-		LU632_RS11400	0.75	-0.1
2,175,230	-		LU632_RS11400	0.75	-1.0
2,175,230	-		LU632_RS11400	0.75	+0.0
2,175,233	-		LU632_RS11400	0.75	+0.0
2,175,233	-		LU632_RS11400	0.75	-0.4
2,175,250	-		LU632_RS11400	0.78	+2.2
2,175,280	+		LU632_RS11400	0.82	+0.4
2,175,342	+				-0.1
2,175,343	-				-1.9
2,175,622	+		LU632_RS11405	0.36	-0.8
2,175,653	+		LU632_RS11405	0.43	-0.7
2,175,653	+		LU632_RS11405	0.43	-0.5
2,175,654	-		LU632_RS11405	0.44	+0.0
2,175,654	-		LU632_RS11405	0.44	+0.3
2,175,656	-		LU632_RS11405	0.44	-0.2
2,175,685	+		LU632_RS11405	0.51	+1.0
2,175,686	-		LU632_RS11405	0.51	+0.4
2,175,686	-		LU632_RS11405	0.51	-1.1
2,175,750	+		LU632_RS11405	0.66	-0.4
2,175,821	+		LU632_RS11405	0.82	-1.6
2,175,867	-				-0.4
2,175,984	+				-1.0
2,175,996	-				-0.4
2,175,998	+				-0.3
2,176,012	+				+1.7
2,176,018	+				-2.1
2,176,019	-				-0.8
2,176,019	-				-2.1
2,176,026	+				+0.7
2,176,027	-				+1.0
2,176,134	-		LU632_RS11410	0.11	+0.4
2,176,199	-		LU632_RS11410	0.16	-0.4
2,176,199	-		LU632_RS11410	0.16	+0.7
2,176,272	-		LU632_RS11410	0.21	-0.8
2,176,283	+		LU632_RS11410	0.22	+0.9
2,176,284	-		LU632_RS11410	0.22	+0.0
2,176,334	-		LU632_RS11410	0.26	+1.7
2,176,334	-		LU632_RS11410	0.26	+0.9
2,176,417	+		LU632_RS11410	0.32	-1.8
2,176,417	+		LU632_RS11410	0.32	+0.3
2,176,428	-		LU632_RS11410	0.33	-0.0
2,176,428	-		LU632_RS11410	0.33	-0.8
2,176,499	-		LU632_RS11410	0.38	-1.9
2,176,499	-		LU632_RS11410	0.38	-0.6
2,176,517	+		LU632_RS11410	0.40	+0.6
2,176,523	-		LU632_RS11410	0.40	+0.1
2,176,613	+		LU632_RS11410	0.47	-0.6
2,176,735	-		LU632_RS11410	0.56	+0.1
2,176,750	-		LU632_RS11410	0.57	+0.0
2,176,872	-		LU632_RS11410	0.67	-0.4
2,177,033	+		LU632_RS11410	0.79	-0.4
2,177,109	+		LU632_RS11410	0.84	-0.2
2,177,109	+		LU632_RS11410	0.84	-1.1
2,177,181	-		LU632_RS11410	0.90	+2.2
2,177,181	-		LU632_RS11410	0.90	-1.0
2,177,181	-		LU632_RS11410	0.90	+0.4
2,177,198	+				-0.9
2,177,240	+				-0.4
2,177,277	-				+0.6
2,177,277	-				-1.4
2,177,319	-				+0.4
2,177,364	-				+2.2
2,177,391	+				-0.1
2,177,391	+				-0.4
2,177,414	-				-0.6
2,177,466	-				-0.7
2,177,486	+				-0.4
2,177,486	+				+0.8
2,177,487	+				+1.0
2,177,608	+				+0.3
2,177,609	+				+0.9
2,177,634	-				+1.5
2,177,676	-				-1.8
2,177,676	-				+0.4
2,177,676	-				-1.4
2,177,682	-				-0.3
2,177,689	+				-0.2
2,177,689	+				+1.2
2,177,690	-				-0.4
2,177,694	-				-0.8
2,177,749	-				-0.7
2,177,757	+				+0.8
2,177,809	-				+1.0
2,177,858	-		LU632_RS11415	0.26	+0.1
2,177,897	-		LU632_RS11415	0.42	+0.0
2,177,960	-		LU632_RS11415	0.69	-0.4
2,177,967	-		LU632_RS11415	0.72	-0.2
2,177,967	-		LU632_RS11415	0.72	-0.4
2,178,082	-				-0.3
2,178,237	+				+0.7
2,178,241	+				-0.0