Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10885

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
2,077,466	+		LU632_RS10880	0.11	+0.3
2,077,487	+		LU632_RS10880	0.14	+1.7
2,077,487	+		LU632_RS10880	0.14	+1.4
2,077,488	-		LU632_RS10880	0.14	+0.2
2,077,488	-		LU632_RS10880	0.14	-1.0
2,077,488	-		LU632_RS10880	0.14	-0.5
2,077,608	+		LU632_RS10880	0.30	-0.6
2,077,608	+		LU632_RS10880	0.30	-1.5
2,077,609	-		LU632_RS10880	0.30	-1.1
2,077,651	+		LU632_RS10880	0.36	-0.6
2,077,652	-		LU632_RS10880	0.36	-0.7
2,077,668	+		LU632_RS10880	0.38	+1.0
2,077,759	-		LU632_RS10880	0.50	-1.3
2,077,802	-		LU632_RS10880	0.56	+1.3
2,077,825	+		LU632_RS10880	0.59	+0.6
2,077,849	+		LU632_RS10880	0.62	+1.9
2,078,037	-		LU632_RS10880	0.87	+0.7
2,078,046	+		LU632_RS10880	0.88	-1.1
2,078,125	-				-2.4
2,078,130	-				-0.3
2,078,134	-				+0.6
2,078,145	-				+0.1
2,078,149	-				-0.1
2,078,161	-				-0.5
2,078,164	+				-1.3
2,078,165	-				+1.5
2,078,165	-				-0.8
2,078,165	-				+0.5
2,078,255	+				-0.0
2,078,256	-				+2.5
2,078,257	+				+0.1
2,078,307	+				+1.7
2,078,310	+				-1.1
2,078,316	+				-1.9
2,078,316	+				-0.5
2,078,316	+				-0.1
2,078,320	-				+0.8
2,078,324	+				+0.3
2,078,366	-				+0.3
2,078,419	-				+0.1
2,078,419	-				-1.1
2,078,464	-				-0.8
2,078,899	+		LU632_RS10885	0.58	-0.3
2,078,999	+		LU632_RS10885	0.71	+0.4
2,078,999	+		LU632_RS10885	0.71	-1.2
2,079,219	-				-0.2
2,079,219	-				-0.1
2,079,279	+				-0.1
2,079,279	+				-2.5
2,079,279	+				-0.7
2,079,279	+				+2.1
2,079,280	-				+0.3
2,079,280	-				+0.0
2,079,280	-				-0.0
2,079,280	-				-0.7
2,079,280	-				-0.3
2,079,280	-				-1.1
2,079,393	+				+0.1
2,079,404	-				+0.9
2,079,511	+				+0.2
2,079,513	+				+0.2
2,079,514	-				-0.7
2,079,514	-				-1.1
2,079,593	-				+0.4
2,079,619	-				-0.4
2,079,629	+				+0.7
2,079,629	+				+0.3
2,079,630	-				-1.0
2,079,681	+				+0.7
2,079,682	-				-0.8
2,079,682	-				-0.3
2,079,684	+				-0.5
2,079,753	-				+0.5
2,079,840	+				+0.1
2,079,840	+				-0.9
2,079,982	+				+0.1
2,080,030	+				+0.4
2,080,034	+				+0.1