Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10860

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
2,072,295	+		LU632_RS10855	0.41	-0.7
2,072,313	-		LU632_RS10855	0.43	+1.3
2,072,393	-		LU632_RS10855	0.48	-0.6
2,072,425	+		LU632_RS10855	0.51	+0.7
2,072,453	-		LU632_RS10855	0.53	-0.7
2,072,491	-		LU632_RS10855	0.55	+1.9
2,072,550	+		LU632_RS10855	0.60	-1.3
2,072,553	+		LU632_RS10855	0.60	-0.9
2,072,598	+		LU632_RS10855	0.63	+1.2
2,072,654	+		LU632_RS10855	0.67	+1.3
2,072,654	+		LU632_RS10855	0.67	-1.0
2,072,790	+		LU632_RS10855	0.77	-0.4
2,072,919	+		LU632_RS10855	0.86	+0.3
2,072,963	+		LU632_RS10855	0.89	-0.7
2,073,082	+				-0.7
2,073,082	+				+0.2
2,073,082	+				+0.8
2,073,166	+				-0.1
2,073,190	+				-2.2
2,073,191	-				-1.3
2,073,228	-				-0.9
2,073,228	-				-0.3
2,073,228	-				+0.7
2,073,228	-				+0.3
2,073,229	+				-1.3
2,073,229	+				-1.1
2,073,229	+				-0.2
2,073,229	+				-0.2
2,073,229	+				+1.6
2,073,230	-				-0.6
2,073,232	-				+1.0
2,073,232	-				-0.4
2,073,232	-				-0.4
2,073,297	+				-1.7
2,073,333	+				-0.5
2,073,334	-				-2.5
2,073,334	-				-0.8
2,073,334	-				+0.7
2,073,511	-		LU632_RS10860	0.40	-0.3
2,073,516	-		LU632_RS10860	0.41	-1.9
2,073,527	+		LU632_RS10860	0.42	-1.4
2,073,767	+		LU632_RS10860	0.83	-0.7
2,073,801	-		LU632_RS10860	0.89	+0.3
2,073,866	+				-0.9
2,073,870	+				-0.4
2,073,870	+				+0.1
2,073,871	-				-0.0
2,073,871	-				-2.5
2,073,871	-				+1.3
2,073,871	-				-0.7
2,073,926	+				-2.5
2,074,005	+				+0.5
2,074,006	-				+0.3
2,074,399	-	hxpB	LU632_RS10865	0.61	+0.5
2,074,399	-	hxpB	LU632_RS10865	0.61	+1.7
2,074,399	-	hxpB	LU632_RS10865	0.61	-1.7
2,074,402	+	hxpB	LU632_RS10865	0.62	-0.2
2,074,402	+	hxpB	LU632_RS10865	0.62	-0.4
2,074,403	-	hxpB	LU632_RS10865	0.62	-1.9
2,074,403	-	hxpB	LU632_RS10865	0.62	+0.4
2,074,403	-	hxpB	LU632_RS10865	0.62	-1.7
2,074,403	-	hxpB	LU632_RS10865	0.62	+0.2
2,074,407	+	hxpB	LU632_RS10865	0.63	-0.8
2,074,407	+	hxpB	LU632_RS10865	0.63	+0.6
2,074,408	-	hxpB	LU632_RS10865	0.63	+0.6
2,074,687	+				+0.3
2,074,777	+				-1.9
2,074,777	+				-1.7
2,074,778	-				+0.5
2,074,814	+				+0.8
2,074,850	-				+0.3
2,074,852	+				-0.6