Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10380

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
1,983,927	+				+1.9
1,983,990	+				-0.0
1,983,990	+				-0.6
1,983,990	+				+0.8
1,983,995	+				+1.5
1,983,999	-				-1.3
1,983,999	-				-0.7
1,984,076	+				+0.3
1,984,077	-				-0.4
1,984,157	-				-0.4
1,984,252	-				-1.3
1,984,255	+				-0.6
1,984,302	+				+0.0
1,984,337	-				-1.3
1,984,453	+	flgN	LU632_RS10380	0.31	-1.1
1,984,454	-	flgN	LU632_RS10380	0.31	+1.3
1,984,454	-	flgN	LU632_RS10380	0.31	-0.8
1,984,457	+	flgN	LU632_RS10380	0.32	+0.9
1,984,533	+	flgN	LU632_RS10380	0.50	-0.3
1,984,688	+	flgN	LU632_RS10380	0.85	-0.5
1,984,688	+	flgN	LU632_RS10380	0.85	-1.3
1,984,688	+	flgN	LU632_RS10380	0.85	+0.3
1,985,108	-				-0.5
1,985,170	+				+0.3
1,985,171	-				-0.4
1,985,172	+				-0.6
1,985,172	+				+2.3
1,985,267	-	flgA	LU632_RS10390	0.16	+0.6
1,985,334	+	flgA	LU632_RS10390	0.26	-0.1
1,985,499	+	flgA	LU632_RS10390	0.51	+0.5
1,985,531	+	flgA	LU632_RS10390	0.55	+0.3
1,985,531	+	flgA	LU632_RS10390	0.55	-0.3
1,985,531	+	flgA	LU632_RS10390	0.55	+0.4
1,985,531	+	flgA	LU632_RS10390	0.55	-1.3
1,985,531	+	flgA	LU632_RS10390	0.55	-0.1
1,985,531	+	flgA	LU632_RS10390	0.55	-0.5
1,985,531	+	flgA	LU632_RS10390	0.55	+1.3
1,985,532	-	flgA	LU632_RS10390	0.55	+0.7
1,985,532	-	flgA	LU632_RS10390	0.55	+0.7
1,985,532	-	flgA	LU632_RS10390	0.55	-0.5
1,985,691	+	flgA	LU632_RS10390	0.79	-0.7